View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_18 (Length: 240)
Name: NF6950_low_18
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_18 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 51808042 - 51807822
Alignment:
| Q |
18 |
cagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacactttctccactccacccatttg |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51808042 |
cagatgtggtggatagataacactgtgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacactttctccactccacccatttg |
51807943 |
T |
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| Q |
118 |
aagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgctccaactctcactgaaatttttcagagttatgcaaatagaattaga |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807942 |
aagaatttgagcccctaagctcaaagttctctttattgttttagatatgtttgctccaactctcactgaaatttttcagagttatgcaaatagaattaga |
51807843 |
T |
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| Q |
218 |
tacgcgcaactcaactagcaa |
238 |
Q |
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|| |||||||||||||||||| |
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| T |
51807842 |
tatgcgcaactcaactagcaa |
51807822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 51804087 - 51803887
Alignment:
| Q |
20 |
gatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacactttctccactccacccatttgaa |
119 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
51804087 |
gatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcctaaacattttctccactccacccatttgaa |
51803988 |
T |
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| Q |
120 |
gaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgctccaactctcactgaaatttttcagagttatgcaaatagaattagata |
219 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
51803987 |
gaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttgctcccgatctcactgaaatttttcagagttatataaagagaattagata |
51803888 |
T |
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| Q |
220 |
c |
220 |
Q |
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| T |
51803887 |
c |
51803887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 51772467 - 51772294
Alignment:
| Q |
18 |
cagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaaacactttctccactccacccatttg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||| | || ||||| | || ||||||||||||| || |||||||||||||||||||||||| ||| |
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| T |
51772467 |
cagatgtggtggatagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttg |
51772368 |
T |
|
| Q |
118 |
aagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgctccaactctcactgaaattt |
191 |
Q |
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| T |
51772367 |
aagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaattt |
51772294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 51780279 - 51780160
Alignment:
| Q |
72 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
171 |
Q |
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||||||||||||| ||| |||| | ||| ||||||||||||| || |||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
51780279 |
tcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgc |
51780180 |
T |
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| Q |
172 |
tccaactctcactgaaattt |
191 |
Q |
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||| | ||| | |||||||| |
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| T |
51780179 |
tcccagtcttaatgaaattt |
51780160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 51761406 - 51761302
Alignment:
| Q |
90 |
taaacactttctccactccacccatttgaagaatttgagcccc-taagctcaaagtcctctttattgttttagatatgtttgctccaactctcactgaaa |
188 |
Q |
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|||||| |||||||||| |||||| || ||||||| ||||||| | || || ||||||||||||||| ||||||||| |||| ||||||||||||| |
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| T |
51761406 |
taaacattttctccacttcacccacttcaagaattcgagccccctgtacttaacttcctctttattgtttctgatatgttttctcccactctcactgaaa |
51761307 |
T |
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| Q |
189 |
ttttt |
193 |
Q |
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||||| |
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| T |
51761306 |
ttttt |
51761302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 6921 - 6802
Alignment:
| Q |
72 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttgc |
171 |
Q |
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||||||||||||| ||| |||| | ||| ||||||||||||| || |||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
6921 |
tcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttgc |
6822 |
T |
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| Q |
172 |
tccaactctcactgaaattt |
191 |
Q |
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||| | ||| | |||||||| |
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| T |
6821 |
tcccagtcttaatgaaattt |
6802 |
T |
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