View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_2 (Length: 492)
Name: NF6950_low_2
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 30054986 - 30054495
Alignment:
| Q |
15 |
aactttaacttctcttgacctttctattcacgttcgtattggagtatttaacaaagtatacttccccaactctcttaatttgcctgctttaaccaccttg |
114 |
Q |
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| T |
30054986 |
aactttaacttctcttgacctttctattcacgttcgtattgtagtatttaacaaagtatacttccccaactctcttaatttgcctgctttaaccaccttg |
30054887 |
T |
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| Q |
115 |
gctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttatacttgtggaggatgcagaaactctttgtatatc |
214 |
Q |
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| T |
30054886 |
gctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttagacttgtggaggatgtagaaactctttgtatatc |
30054787 |
T |
|
| Q |
215 |
aagtgacacacttgtcaatttgactat------gtatggat---------atgctagtttgatgtgcaacatatctgctcatttgctttccaacttttct |
299 |
Q |
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| T |
30054786 |
aagtgacacacttgtcaatttgactatatatgggtatggatttgataccaatgctagtttgattggcaacatatctgctcatttgctttccaacttttct |
30054687 |
T |
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| Q |
300 |
tttattggatctctcaaccaaaaaccatgccatatccatctttgttctgttaaacacgtttacaaggatgcagacatcggattc---aatcgcccgttgg |
396 |
Q |
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| T |
30054686 |
tttattggatctctcaaccaaaaaccatgccatatccatctttgttctgttaaacatgtttacatggatgcagacatcggattcattaatcgccccttgg |
30054587 |
T |
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| Q |
397 |
aagatgaatctgcagtcctactcaactggctactactagttttctaatatcaaatcattgactgtctcttctgatactccacaggttctgctc |
489 |
Q |
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| T |
30054586 |
aagacgaatctgcagtcctactcaactggctactac-agttttctaatatcaaatcattgactgtctcttctgatactcttcaggttttgctc |
30054495 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 45906437 - 45906383
Alignment:
| Q |
191 |
ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtat |
245 |
Q |
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||||||| |||| ||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
45906437 |
ggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtat |
45906383 |
T |
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