View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_22 (Length: 210)
Name: NF6950_low_22
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 27878114 - 27878307
Alignment:
| Q |
17 |
caagagccactttctcagacatctttgtcaacttcttaacactgnnnnnnntcccacatacataacatcatcaaaattgcataaaacacgaaacaaaaca |
116 |
Q |
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| T |
27878114 |
caagagccactttctcagacatctttgtcaacttcttaacactgaaaaaaatcccacatacataacatcatcaaaattgcataaaacacgaaacaaaaca |
27878213 |
T |
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| Q |
117 |
ttcagcgatagaaatttttcaaatttcttaccttttcatactattcagggcaagtggactaatctgtgattgagaagaaccaggttgcaacctc |
210 |
Q |
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| T |
27878214 |
ttcagtgatagatttttttcaaatttcttaccttttcatactattcagggcaagtggactaatctgtgattgagaagaaccaggttgcaacctc |
27878307 |
T |
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