View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6950_low_23 (Length: 207)
Name: NF6950_low_23
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6950_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 47686461 - 47686287
Alignment:
| Q |
14 |
gtgctggtgactctgtattgttgaaaatggactggaaaaatggaactatgtcatatctaaatgaacaacttggaccaagatacatacaacctttcataca |
113 |
Q |
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| T |
47686461 |
gtgctggtgactctgtattgttgaaaatggattggaaaaatggaactatgtcatatctaaatgaacaacttggaccaagatacatacaacctttcataca |
47686362 |
T |
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| Q |
114 |
ccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctggtgtacactg |
188 |
Q |
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| T |
47686361 |
ccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctggtgtacactg |
47686287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 47674299 - 47674173
Alignment:
| Q |
62 |
tgtcatatctaaatgaacaacttggaccaagatacatacaacctttcatacaccatcttgaaaaattcccgaaagccgaatccaaacattcagtacattc |
161 |
Q |
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| T |
47674299 |
tgtcgtatctaacagaacaacttggaccaagatataaacaacctttcatacaccatcttgaaaaacctccgaaagccgaatctaaacattcattacattc |
47674200 |
T |
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| Q |
162 |
ttgtttagacaaatctggtgtacactg |
188 |
Q |
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| T |
47674199 |
ttgcttagacagatccggtgtacactg |
47674173 |
T |
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