View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6950_low_3 (Length: 453)

Name: NF6950_low_3
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6950_low_3
NF6950_low_3
[»] chr3 (2 HSPs)
chr3 (8-434)||(49995545-49995971)
chr3 (227-271)||(8247541-8247585)
[»] chr7 (1 HSPs)
chr7 (220-270)||(7139752-7139802)
[»] chr5 (3 HSPs)
chr5 (210-260)||(19045555-19045605)
chr5 (225-271)||(28173086-28173132)
chr5 (239-271)||(28575807-28575839)
[»] chr6 (1 HSPs)
chr6 (242-270)||(23918352-23918380)
[»] chr4 (1 HSPs)
chr4 (223-271)||(6424204-6424252)
[»] chr2 (2 HSPs)
chr2 (223-271)||(35198232-35198280)
chr2 (223-271)||(42043198-42043246)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 49995971 - 49995545
Alignment:
Q  8 ttggtgttaacattgtaatattcatattttaggtggaaaggatattcaacctcagtagttcctcccaaatagagtacaaggtatttgtctccaatggact 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49995971 ttggtgttaacattgtaatattcatattttaggtggaaagggtattcaacctcagtagttcctcccaaatagagtacaaggtatttgtctccaatggact 49995872  T
Q  108 gtatttgttgtgtgtaaacctgattttttataaaattgatagagtagttataagttatttgctatcaatcacatactcggacaccggacacgacactaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49995871 gtatttgttgtgtgtaaacctgattttttataaaattgatagagtagttataagttatttgctatcaatcacatactcggacaccggacacggcactaag 49995772  T
Q  208 aaatcgacatcagtgataatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtccacacctatatgtatcaaacatcgtacacgctttcc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49995771 aaatcgacatcagtgataatttaaaaaattgaattaattgaatgtaattacatgtgtcggtgtccacacctatatgtatcaaacattgtacacgctttcc 49995672  T
Q  308 atcataagtgccgttgctacagaggtcatttggatgaagttagtgctaacaatgattatgattgcagcttctgatggcattcatggaaggacattttgaa 407  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49995671 atcataagtgccattgctacagaggtcatttggatgaagttattgctaacaatgattatgattgcagcttctgatggcattcatggaagggcattttgaa 49995572  T
Q  408 ttttgacgcattggtagaagagcattc 434  Q
    |||||||||||||||||||||||||||    
T  49995571 ttttgacgcattggtagaagagcattc 49995545  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 8247585 - 8247541
Alignment:
Q  227 tttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtc 271  Q
    |||||||||||||||| | || ||| |||||||||||||||||||    
T  8247585 tttaaaaaattgaattgactggatgtaattacatgtgtcggtgtc 8247541  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 7139802 - 7139752
Alignment:
Q  220 gtgataatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgt 270  Q
    |||||||||||| ||| |||||||| |||||||||| ||||||||| ||||    
T  7139802 gtgataatttaagaaaatgaattaactgaatgcaataacatgtgtcagtgt 7139752  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 19045555 - 19045605
Alignment:
Q  210 atcgacatcagtgataatttaaaaaattgaattaattgaatgcaattacat 260  Q
    ||||| |||||||||||||||||||| |||||||||| |||| ||| ||||    
T  19045555 atcgagatcagtgataatttaaaaaaatgaattaattaaatgtaatcacat 19045605  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 28173132 - 28173086
Alignment:
Q  225 aatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtc 271  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| |||||    
T  28173132 aatttgaaaaaatgaattaattgaatgcagttacatgtgtcagtgtc 28173086  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 28575807 - 28575839
Alignment:
Q  239 aattaattgaatgcaattacatgtgtcggtgtc 271  Q
    ||||||||||||||||||||||||| |||||||    
T  28575807 aattaattgaatgcaattacatgtgacggtgtc 28575839  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 23918380 - 23918352
Alignment:
Q  242 taattgaatgcaattacatgtgtcggtgt 270  Q
    |||||||||||||||||||||||||||||    
T  23918380 taattgaatgcaattacatgtgtcggtgt 23918352  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 6424252 - 6424204
Alignment:
Q  223 ataatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtc 271  Q
    |||| |||||||  |||||||||| |||||||| |||||||||||||||    
T  6424252 ataacttaaaaagatgaattaattcaatgcaatcacatgtgtcggtgtc 6424204  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 35198280 - 35198232
Alignment:
Q  223 ataatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtc 271  Q
    ||||||||| ||| ||||||||||||||| ||| ||||||| |||||||    
T  35198280 ataatttaagaaaatgaattaattgaatgtaatcacatgtgacggtgtc 35198232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 42043246 - 42043198
Alignment:
Q  223 ataatttaaaaaattgaattaattgaatgcaattacatgtgtcggtgtc 271  Q
    ||||||||| ||| ||||||||||||||| ||| ||||| |||||||||    
T  42043246 ataatttaataaaatgaattaattgaatgtaataacatgcgtcggtgtc 42043198  T

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