View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6950_low_4 (Length: 393)

Name: NF6950_low_4
Description: NF6950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6950_low_4
NF6950_low_4
[»] chr1 (6 HSPs)
chr1 (113-375)||(8142221-8142481)
chr1 (1-123)||(8142086-8142208)
chr1 (180-373)||(7500987-7501177)
chr1 (273-375)||(7498197-7498299)
chr1 (26-122)||(4931654-4931749)
chr1 (180-243)||(7498499-7498560)
[»] chr2 (1 HSPs)
chr2 (1-172)||(9130896-9131066)
[»] chr5 (1 HSPs)
chr5 (113-170)||(22209802-22209859)
[»] chr4 (2 HSPs)
chr4 (114-162)||(1530418-1530466)
chr4 (113-163)||(1492294-1492344)
[»] chr3 (2 HSPs)
chr3 (113-172)||(54256587-54256646)
chr3 (64-96)||(41514446-41514478)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 113 - 375
Target Start/End: Original strand, 8142221 - 8142481
Alignment:
Q  113 tccgctatttgtcatattggattttt-ggcaatccaatattttccacgatccgatattaatcgataggaattacatatcaagaatagatgaagtacaatc 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8142221 tccgctatttgtcatattggattttttggcaatccaatattttccacgatccgatattaatagataggaattacatatcaagaatagatgaagtacaatc 8142320  T
Q  212 ttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact 311  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8142321 ttcaagccatacatagtcactgtgagttaaggtat---gattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact 8142417  T
Q  312 ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgac 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8142418 ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgac 8142481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8142086 - 8142208
Alignment:
Q  1 agattttttgttttatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8142086 agattttttgttttatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttcgcatgctttattttatacataattatttatttgaac 8142185  T
Q  101 agttttgcagtttccgctatttg 123  Q
    |||||||||||||||||| ||||    
T  8142186 agttttgcagtttccgctctttg 8142208  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 373
Target Start/End: Complemental strand, 7501177 - 7500987
Alignment:
Q  180 aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttattt 279  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||   | ||||||||||  ||||||||||||||||    
T  7501177 aattacatgtcaagaatacatgaagtacattcttcaagccatacatagtcattgtgagttaaggcat---gcttggctaagatatgtgcctcatttattt 7501081  T
Q  280 atattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatg 373  Q
     |||| |||||||||||||||| |||||  ||||||| | |||||||  | ||||||||||||||||||| ||||| ||| ||||| |||||||    
T  7501080 gtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatg 7500987  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 7498299 - 7498197
Alignment:
Q  273 tttatttatattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctat 372  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  7498299 tttatttatattcattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctat 7498200  T
Q  373 gac 375  Q
    |||    
T  7498199 gac 7498197  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 4931749 - 4931654
Alignment:
Q  26 ttttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctattt 122  Q
    ||||||||||||| |||||||  || ||||||||||  | |||||||||||||||| |||||||||||||| ||||| | ||||| |||| ||||||    
T  4931749 ttttaaatttctggttatgtagtttttatttgtgtgcaa-catgctttattttatatataattatttatttcaacaggtgtgcagcttccactattt 4931654  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 7498560 - 7498499
Alignment:
Q  180 aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaagg 243  Q
    |||||||||||||||||| ||| ||||   |||||| |||||||||||||||| ||||||||||    
T  7498560 aattacatatcaagaataaatgtagtat--tcttcatgccatacatagtcactttgagttaagg 7498499  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 9130896 - 9131066
Alignment:
Q  1 agattttttgttttatatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaac 100  Q
    |||||||  ||| ||||| || ||||||| |||||||||||   || ||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  9130896 agattttaagttgtatatcaattcatttttaatttctgtttggttagcttttatttgtttgt-agcatgctttattttatatataattatttatttgaac 9130994  T
Q  101 agttttgcagtttccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat 172  Q
     ||||||  | || |||||| | |||||| | ||||||||| |||  ||||||||| |||| ||||||||||    
T  9130995 cgttttgtggcttacgctatgtatcatatcgaatttttggcgatctgatattttccgcgatacgatattaat 9131066  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 22209859 - 22209802
Alignment:
Q  113 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatatta 170  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||    
T  22209859 tccgctatttgtcatatcggatttttggcgatccaatattttccgtgatcagatatta 22209802  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 1530418 - 1530466
Alignment:
Q  114 ccgctatttgtcatattggatttttggcaatccaatattttccacgatc 162  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  1530418 ccgctatttgttatattggatttttggcgatccgatactttccacgatc 1530466  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 1492294 - 1492344
Alignment:
Q  113 tccgctatttgtcatattggatttttggcaatccaatattttccacgatcc 163  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||| ||||||    
T  1492294 tccgctatttgttatatcggatttttggcgatcctatattttccgcgatcc 1492344  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 54256646 - 54256587
Alignment:
Q  113 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat 172  Q
    |||||||||| |||||   |||||||||| |||| ||||||||||||||||| |||||||    
T  54256646 tccgctatttctcatagcagatttttggcgatccgatattttccacgatccgctattaat 54256587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 41514478 - 41514446
Alignment:
Q  64 agcatgctttattttatacataattatttattt 96  Q
    |||||||||||||||||| ||||||||||||||    
T  41514478 agcatgctttattttatatataattatttattt 41514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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