View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6951_high_2 (Length: 429)
Name: NF6951_high_2
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 9574574 - 9574985
Alignment:
| Q |
19 |
agatataggttgaggctaaactcaatagtgccatgaat------aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaacaagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9574574 |
agatataggttgaggctaaactcaatagtgccatgaatgtaatgaataatacttttcataaagacatgtgttgtgtttttggggtatgtataaacaagca |
9574673 |
T |
|
| Q |
113 |
cacttcttgaacttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgaggttatgatattatgttggatcttcataggagttt |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
9574674 |
cacttcttgaacttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgaggctatgatattatgttggatcttcataggggttt |
9574773 |
T |
|
| Q |
213 |
cttgaagaaccactgagttttgcctttgtattcacatgtgtgggtgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcatatttat |
312 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9574774 |
catgaagaaccactgagttttgcctttgtattcacatgtatgggtgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcatatttat |
9574873 |
T |
|
| Q |
313 |
tttgagaaagaaaaataactggacggg--tgatgacttcacgaaaaattcaaagttaagcttagacataatcaattcataaagagagtcagaagaagcgg |
410 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9574874 |
tttgagaaagaaaaataactggacgggcctcaatccttcatggaaaattcaaagttaagcttagacataatcaattcataaagatagtcagaagaagcgg |
9574973 |
T |
|
| Q |
411 |
caagaataatgt |
422 |
Q |
| |
|
||||||| |||| |
|
|
| T |
9574974 |
caagaatgatgt |
9574985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
74 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
154 |
Q |
| |
|
|||||| |||| ||||||||| | ||| ||||||||||| || | ||||||| || ||||||||| || |||||||||||| |
|
|
| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University