View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_high_9 (Length: 285)
Name: NF6951_high_9
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 266
Target Start/End: Complemental strand, 31595487 - 31595278
Alignment:
| Q |
53 |
aaaagtttatgtctttaattcaatatttgtttaggaagaaattgacaacaatgattcttgtatctgcgattctattgcttcacaaatggtacaaaaatga |
152 |
Q |
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| T |
31595487 |
aaaagtttatgtctttaattcgatatttgtttgggaagaaattgacaacaatgattcttgtatctgcgattctattgcttcacaaatggtacaaaaatga |
31595388 |
T |
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| Q |
153 |
aaaacacaactatttgggaataagaaaagcaacatctcaatgtatctgtttatcttctttacgtttgacactggaaggaagaaggaaagtgcagtttttg |
252 |
Q |
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| T |
31595387 |
aatacacaactatttgggaataagaaaagcaacatctcaatgtatctgtttatcttctttacgtttgacactg----gaagaaggaaagtgcagtttttg |
31595292 |
T |
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| Q |
253 |
tgttggaaccagag |
266 |
Q |
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| T |
31595291 |
tgttggaaccagag |
31595278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 39869753 - 39869883
Alignment:
| Q |
134 |
acaaatggtacaaaaatgaaaaacacaactatttgggaataagaaaagcaacatc-tca-atgtatctgtttatcttctttacgtttgacactggaagga |
231 |
Q |
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| T |
39869753 |
acaaatggtgcaaaaatgaaaaacacaactatttgggaataagaaaaccaacaacatgatatgcatctgtttatcttctttacgtttgacactggaa--- |
39869849 |
T |
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| Q |
232 |
agaaggaaagtgcagtttttgtgttggaaccagag |
266 |
Q |
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| T |
39869850 |
-gaaggaaagtgcagtttttgtgttggaaccagag |
39869883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 39869706 - 39869756
Alignment:
| Q |
53 |
aaaagtttatgtctttaattcaatatttgtttaggaagaaattgacaacaa |
103 |
Q |
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| T |
39869706 |
aaaagtttatgtctttaattcgatatttgtttgagaagaaattgataacaa |
39869756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 36681984 - 36682034
Alignment:
| Q |
53 |
aaaagtttatgtctttaattcaatatttgtttaggaagaaattgacaacaa |
103 |
Q |
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| T |
36681984 |
aaaagtttatgtctttaatttgatttttgtttgggaagagattgacaacaa |
36682034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 37550533 - 37550483
Alignment:
| Q |
53 |
aaaagtttatgtctttaattcaatatttgtttaggaagaaattgacaacaa |
103 |
Q |
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|||||||||||||||||||| || ||||||| |||||| ||||||||||| |
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| T |
37550533 |
aaaagtttatgtctttaatttgatttttgtttgggaagagattgacaacaa |
37550483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33351701 - 33351651
Alignment:
| Q |
53 |
aaaagtttatgtctttaattcaatatttgtttaggaagaaattgacaacaa |
103 |
Q |
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|||||||||||||||||||| || ||||||| |||||| ||||||||||| |
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| T |
33351701 |
aaaagtttatgtctttaatttgatttttgtttgggaagagattgacaacaa |
33351651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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