View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_1 (Length: 456)
Name: NF6951_low_1
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 45540822 - 45540505
Alignment:
| Q |
18 |
tgatttgcattacctgtgacatttatagaagcgcacgtttgttcttggtttaatggttctaaagttggaaaagatgatgtccccgtatggatagtatcat |
117 |
Q |
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| T |
45540822 |
tgatttgcattacttgtgacatttatagaagcgcacgtttgttcttggtttaatgattctaaagttggaaaagatgatgtccctgtatggatagtatcat |
45540723 |
T |
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| Q |
118 |
ccactccctgttgtcctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatgattt |
217 |
Q |
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| T |
45540722 |
ccactccctgttgtcctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatgattt |
45540623 |
T |
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| Q |
218 |
aactacatcatcggagtcactgttatttgtatttgttttctcattgaatgaactctcttgcgacaattcatatgtggatgttggtgaattgagatttgaa |
317 |
Q |
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| T |
45540622 |
aactacatcatcggagtcactgttatttgtatttgttttctcattgaatgaactttcttgcgacaattcatatgtggatgttggtgaattgagatttgaa |
45540523 |
T |
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| Q |
318 |
ataacattagttgaagaa |
335 |
Q |
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| T |
45540522 |
ataacattagttgaagaa |
45540505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 45540468 - 45540356
Alignment:
| Q |
333 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctaggaatggattttggaacgatgacgacaatgatgtcacggagg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
45540468 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctatgaatggattttggaacgatgacgacaatgatgtcacggggg |
45540369 |
T |
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| Q |
433 |
cttggttgatgtc |
445 |
Q |
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| T |
45540368 |
cttggttgatgtc |
45540356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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