View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_11 (Length: 282)
Name: NF6951_low_11
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 6036293 - 6036200
Alignment:
| Q |
171 |
caagtcaataaagtccataataccaacctcagttttctcacttcttaaacctcattatgggttctcagttgatagtgaagacaactacatataa |
264 |
Q |
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| T |
6036293 |
caagtcaataaagtccataataccaacctcagttttctcacttcttaaacctcattatgggttctcagttgatagtgaagacaactacatataa |
6036200 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6036458 - 6036397
Alignment:
| Q |
1 |
ttgaacaatatcaaagaacttgtaagtttcattttgtttaacaatctactttaataaacata |
62 |
Q |
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| T |
6036458 |
ttgaacaatatcaaagaacttgcaagtttcattttgtttaacaatctactttaataaacata |
6036397 |
T |
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