View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_12 (Length: 270)
Name: NF6951_low_12
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 51114967 - 51115216
Alignment:
| Q |
1 |
atcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttgttctctgtatcaat |
100 |
Q |
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| T |
51114967 |
atcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttgttctctgtttcaat |
51115066 |
T |
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| Q |
101 |
atttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttctatttagtttttgatcaactttcgttgttgc |
200 |
Q |
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| T |
51115067 |
atttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacattttgttgtttctatttagtttttgatcaactttcgttgttgc |
51115166 |
T |
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| Q |
201 |
ttaatgattctgtttgtggtgacttgattattgaatacacaagtctctcatgt |
253 |
Q |
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| T |
51115167 |
ttaatgattctgtttgt-gtgacttgattattgaat--acaagtctctcatgt |
51115216 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
81 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
154 |
Q |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
117 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
171 |
Q |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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