View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6951_low_15 (Length: 250)

Name: NF6951_low_15
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6951_low_15
NF6951_low_15
[»] chr4 (5 HSPs)
chr4 (18-237)||(48965187-48965406)
chr4 (19-237)||(48958002-48958220)
chr4 (67-182)||(48961204-48961319)
chr4 (19-237)||(48912448-48912666)
chr4 (19-151)||(48974062-48974194)
[»] chr2 (3 HSPs)
chr2 (47-237)||(13440058-13440248)
chr2 (29-237)||(13448221-13448429)
chr2 (85-237)||(13454692-13454844)
[»] scaffold0536 (2 HSPs)
scaffold0536 (19-237)||(6614-6832)
scaffold0536 (19-153)||(10596-10730)
[»] chr5 (2 HSPs)
chr5 (43-165)||(12540615-12540737)
chr5 (43-237)||(28385192-28385386)
[»] chr7 (1 HSPs)
chr7 (43-162)||(3417654-3417773)
[»] chr8 (1 HSPs)
chr8 (43-237)||(12641608-12641802)
[»] chr6 (2 HSPs)
chr6 (91-168)||(12483642-12483719)
chr6 (19-163)||(12590275-12590419)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 48965406 - 48965187
Alignment:
Q  18 tcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965406 tcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgata 48965307  T
Q  118 acagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965306 acagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagaga 48965207  T
Q  218 aggctgtgaagagattgatg 237  Q
    ||||||||| ||||||||||    
T  48965206 aggctgtgaggagattgatg 48965187  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 48958220 - 48958002
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    ||||| || ||||||||||| |||||||||||| | ||||||||||| ||||| || |||||    |||||||||||||||||||| || ||  ||||||    
T  48958220 cattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgataa 48958121  T
Q  119 cagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaa 218  Q
    |  | |||||||| ||||| ||||| |||||||||||||| |||||| | |  |||||||| || | | ||||| | |||||||  ||||| ||||| ||    
T  48958120 ctaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaagatagtatagaaaa 48958021  T
Q  219 ggctgtgaagagattgatg 237  Q
    |||||||||||||||||||    
T  48958020 ggctgtgaagagattgatg 48958002  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 48961319 - 48961204
Alignment:
Q  67 atgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtt 166  Q
    ||||| ||||||||   |||||||||||||||||||||||| ||  ||||||| || ||||| || |||||| | ||||||||||||||||||||||||     
T  48961319 atgataacatggcccgtacatggagaacaattctacaacgagaagttgataactgatgtgcggggtattggaattgaagttggtgcaacagaatggtgtg 48961220  T
Q  167 tgactggttttgaaga 182  Q
    ||  |||| |||||||    
T  48961219 tggatggtattgaaga 48961204  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 48912448 - 48912666
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    |||||||| ||||| ||||| || ||||| ||| |||| |||||||| ||||| || |||||    ||||||||||| || ||||| || ||  ||||||    
T  48912448 cattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgataa 48912547  T
Q  119 cagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaa 218  Q
    || | ||||  |||||||| ||||| || |||||||| |||||| |    |||||| |||  |||||||||||| ||||  | || ||||  || |||||    
T  48912548 cacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaa 48912647  T
Q  219 ggctgtgaagagattgatg 237  Q
    || ||||||| ||||||||    
T  48912648 ggttgtgaagcgattgatg 48912666  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 48974194 - 48974062
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    ||||| || ||||||||||| ||||| || ||| |||| |||||||| ||||| || |||||    ||||  ||||||||||||||||| ||  ||||||    
T  48974194 cattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagttgataa 48974095  T
Q  119 cagaagtgcgagggattggagtggaagttggtg 151  Q
    |  | ||||| || ||||| ||||| |||||||    
T  48974094 ctcaggtgcggggtattggtgtggaggttggtg 48974062  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 13440248 - 13440058
Alignment:
Q  47 ctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagt 146  Q
    ||||| ||||||| ||||| ||||| || |||||    |||||||| |||||||||||||| |||||| ||||| || | ||||| ||||||||||||||    
T  13440248 ctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaagt 13440149  T
Q  147 tggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtgaagagattgatg 237  Q
     |||||||| |||||||||  || |||| |||  || ||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||    
T  13440148 cggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggataacatagagaaggctgtgaggagattgatg 13440058  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 13448429 - 13448221
Alignment:
Q  29 ggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcg 128  Q
    ||||||| || || ||||||||| ||||||| ||||| ||||| || |||||    |||||||| ||||||||||| || |||||||||||| || | ||    
T  13448429 ggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccg 13448330  T
Q  129 agggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtgaag 228  Q
    ||| |||||||| ||||| ||||||||||||||||||  || |||| | |  || ||| ||||| | ||||| || |||||||||||||||||||| | |    
T  13448329 aggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagcatagagaaggctgtaagg 13448230  T
Q  229 agattgatg 237  Q
    |||||||||    
T  13448229 agattgatg 13448221  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 13454844 - 13454692
Alignment:
Q  85 catggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaa 184  Q
    |||||||| |||||||||||||| ||||| |||||| |||| ||||| |||||| | ||||| ||||||||||||||||||   | |||| |||  || |    
T  13454844 catggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggaga 13454745  T
Q  185 gagagaagctggtgagtagtgatagcatagagaaggctgtgaagagattgatg 237  Q
    |||||||| ||||||| |  |||||||||||||||||||||| ||||||||||    
T  13454744 gagagaagttggtgagcaaagatagcatagagaaggctgtgaggagattgatg 13454692  T

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Target: scaffold0536 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 6614 - 6832
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    |||||||| ||||| ||||| || ||||||||| |||| |||||||||||||| || |||||    |||||||||||||| ||||| |||||  ||||||    
T  6614 cattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataa 6713  T
Q  119 cagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaa 218  Q
    || | |||||| | ||||| ||||  || || ||| | || ||| |||  |||||| |||  || ||||||||| ||||| | || ||||| || |||||    
T  6714 cacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaa 6813  T
Q  219 ggctgtgaagagattgatg 237  Q
    |||||||| ||||||||||    
T  6814 ggctgtgaggagattgatg 6832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 10596 - 10730
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    |||||||| ||||| ||||| |||||||| ||| |||| |||||||| ||||| || |||||    |||||||||||||| ||||| || ||  ||||||    
T  10596 cattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataa 10695  T
Q  119 cagaagtgcgagggattggagtggaagttggtgca 153  Q
    |  ||||||| |||||||| | |||||| ||||||    
T  10696 cgcaagtgcgggggattgggggggaagtgggtgca 10730  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 12540737 - 12540615
Alignment:
Q  43 gaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtgg 142  Q
    ||||||||||||||||| ||||| ||||| || ||||| |  |||||||| || || | |||||| ||||| |||||| | || ||||| |||||||| |    
T  12540737 gaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtag 12540638  T
Q  143 aagttggtgcaacagaatggtgt 165  Q
    |||| ||||||||||||||||||    
T  12540637 aagtaggtgcaacagaatggtgt 12540615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 28385386 - 28385192
Alignment:
Q  43 gaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtgg 142  Q
    ||||||||||| ||||| ||||| ||||| || |||||||  |||| ||| || |||  ||| || ||| ||||||||  ||| ||| | ||||||||||    
T  28385386 gaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtgg 28385287  T
Q  143 aagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtgaagagattgatg 237  Q
    |||| |||| ||| |||||||||   | ||||  ||  || ||| ||||| ||||||| || |||| ||||||||||||| ||| || |||||||    
T  28385286 aagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggctatgaggaaattgatg 28385192  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 3417654 - 3417773
Alignment:
Q  43 gaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtgg 142  Q
    |||||||||||||| || ||||| ||||| || |||||    |||||||| ||||| | ||| || ||||| |||||| |||| ||||| ||||||||||    
T  3417654 gaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagtccgaggaattggagtgg 3417753  T
Q  143 aagttggtgcaacagaatgg 162  Q
    |||| |||||||||||||||    
T  3417754 aagtaggtgcaacagaatgg 3417773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 12641608 - 12641802
Alignment:
Q  43 gaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtgg 142  Q
    ||||||||| |||| ||| |||| ||||| || |||||    || |||||||| ||||| || || || |||||||| |  |||||| ||||||| ||||    
T  12641608 gaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataactgttgtgcgaaggattggggtgg 12641707  T
Q  143 aagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtgaagagattgatg 237  Q
    | || ||||||||||| |||| | |   ||||| | ||| || ||||||  ||||||||||  |||| |||||||| ||||||| ||||||||||    
T  12641708 aggtgggtgcaacagagtggtctgtacatggttataaaggaaaagagaaagtggtgagtagacatagtatagagaaagctgtgaggagattgatg 12641802  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 12483642 - 12483719
Alignment:
Q  91 gaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttg 168  Q
    ||||| || ||||| || ||||| |||||  | |||||||||||||| |||||||| ||||||||||| |||||||||    
T  12483642 gaacatttttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaacagagtggtgtttg 12483719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 12590275 - 12590419
Alignment:
Q  19 cattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataa 118  Q
    |||||||| ||||| |||   |||||||| ||| |||| ||  |||||||||| |||||||| |   |||| ||||| || ||||| || ||  ||||||    
T  12590275 cattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgataa 12590374  T
Q  119 cagaagtgcgagggattggagtggaagttggtgcaacagaatggt 163  Q
    | || ||||  || |||||||||||||||||||||||||| ||||    
T  12590375 ctgatgtgcatggaattggagtggaagttggtgcaacagattggt 12590419  T

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