View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_4 (Length: 392)
Name: NF6951_low_4
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 30946609 - 30946450
Alignment:
| Q |
99 |
attttatttataattgacgcctaaaaacctcaactaaatcgatatacttttaataagggtgttggatagttcgactgatttgtattaaataagaaagaat |
198 |
Q |
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| T |
30946609 |
attttatttataattgacgcctaaaaaccttaactaaatcgatatacttttaataagggtgttggatagttcgactgatttgtattaaataagaaagaat |
30946510 |
T |
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| Q |
199 |
tgtccaatattgtaaagaggttgaaaataagatgacaagtctttaaaagaagtattgatg |
258 |
Q |
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| T |
30946509 |
tgtccaatattgtaaagaggttgaaaataagatgacaagtctttaaaagaagtattgatg |
30946450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 30946744 - 30946668
Alignment:
| Q |
12 |
gacatcaagagaagtatttttgcgcctggagtattgacatattattgcctccgacttttccggactctccaataaat |
88 |
Q |
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| T |
30946744 |
gacatcaagagaagtatttttgcggctgaagtattgacatattgttgcctccgacttttccggactctccaataaat |
30946668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 30946396 - 30946357
Alignment:
| Q |
312 |
gagtaacccgaaaactagctccatcttgttgatgaaggtg |
351 |
Q |
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| T |
30946396 |
gagtaacccgaaaactagctccatcttgttgatgaaggtg |
30946357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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