View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_6 (Length: 382)
Name: NF6951_low_6
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 34759809 - 34760172
Alignment:
| Q |
16 |
gtattcagatcattaccaaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttg |
115 |
Q |
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| T |
34759809 |
gtattgagatcattaccaaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatgtttg |
34759908 |
T |
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| Q |
116 |
cctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataagattaataagatgcatttaaggttgttaatagacagatatgcggc |
215 |
Q |
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| T |
34759909 |
cctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataagattaataagatgcatttaaggttgttaatagacagatatgcagc |
34760008 |
T |
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| Q |
216 |
aataaacatagccc--cnnnnnnnnnnnnnnngctagaaaagt----catgtttggcatccaataaccaatgtaggtacaagaagatccttctcgtgtaa |
309 |
Q |
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| T |
34760009 |
aataaacatagccctttttctttttagtttttgctagaaaagttatacatgtttggcatccaataaccaatgtaggtacaagaagatccttctcgtgtaa |
34760108 |
T |
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| Q |
310 |
tacaggattttgatattacttttctgaacaaataagagacaaacaaacacaagtggtgatgtcc |
373 |
Q |
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| T |
34760109 |
ttcaggattttgatattacttttctgaacaaacaagagacaaacaaacataagtggtgatgtcc |
34760172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 43729030 - 43729184
Alignment:
| Q |
16 |
gtattcagatcattaccaaaggagccagcaataacccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttg |
115 |
Q |
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| T |
43729030 |
gtattaagatcattaccaaatgatccagcaataacccatatttgtgataagctgaattcatattgatcagttacccttggtgtccacacatttatgcttg |
43729129 |
T |
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| Q |
116 |
cctttgctccaaagtattgatttccatttacaaaaagaattgcatgctgtaataa |
170 |
Q |
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| T |
43729130 |
cttttgctccatagtattgttctccatttacaaaaacaactgcatgctgcaataa |
43729184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 30928677 - 30928769
Alignment:
| Q |
49 |
acccatatctgtgacaagctaaattcatatccatctgttacatgaggtgcccacacatttatatttgcctttgctccaaagtattgatttcca |
141 |
Q |
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| T |
30928677 |
acccatatttgagacaagctgaattcattttcatcttctacatgtggagcccacaaatttattgtagcctttgctccatagtatcgatctcca |
30928769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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