View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_7 (Length: 378)
Name: NF6951_low_7
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 48018544 - 48018195
Alignment:
| Q |
18 |
cctactttcaacgtcggtgatatttttgcaatgattgctgcttctcttgttgcaattgtagaggtttgttttaatatttcattttctttataaatataga |
117 |
Q |
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| T |
48018544 |
cctactttcaatgtcggtgatatttttgcaatgattgctgcttctcttgttgcaattgtagaggtttgttttaatatttcattttctttataaatataga |
48018445 |
T |
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| Q |
118 |
ctaacttgtgtggggatcgttgttatacattttcggatataacgatcacagtaacaatattttgtatatgacaaagtgtgccatgattaatatggcattg |
217 |
Q |
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| T |
48018444 |
ctaacttgtgtggggatcgttgttatacattttcggatataacgatcacagtaacaatattttgtatatgacaaagtgtgccatgattaatatggcattg |
48018345 |
T |
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| Q |
218 |
tggactagacattttgagttgcaaaagttctctgtgaattgtgaacaatcatgttcttttttatatccgcatattgtaatctggctatttctaagtagaa |
317 |
Q |
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| T |
48018344 |
tggactagacattttgagttgcaaaagttctctgtgaattgtgaacaatcatgttcttttttatatccgcatattgtaatctggctatttctaagtagaa |
48018245 |
T |
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| Q |
318 |
ggtgtatgtttaattttttagtatccatttggctatactttgatattcat |
367 |
Q |
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| T |
48018244 |
ggtgtatgtttaattttttagtttccatttggctatactttgatattcat |
48018195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 16856921 - 16856973
Alignment:
| Q |
172 |
caatattttgtatatgacaaagtgtgccatgattaatatggcattgtggacta |
224 |
Q |
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| T |
16856921 |
caatattttgtatatgccaatgtgttccatgatcattatggcattgtggacta |
16856973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 16856843 - 16856894
Alignment:
| Q |
109 |
aaatatagactaacttgtgtggggatcgttgttatacattttcggatataac |
160 |
Q |
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| T |
16856843 |
aaatatagactaacttgagtgggcatagttgttatatatttttggatataac |
16856894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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