View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6951_low_8 (Length: 344)
Name: NF6951_low_8
Description: NF6951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6951_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 1209509 - 1209196
Alignment:
| Q |
13 |
aatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttagaaaaggagatttcgataatccgaagtttcatcaagg |
112 |
Q |
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| T |
1209509 |
aatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttaagaaaggagattttgataatcagaagtttcatca--g |
1209412 |
T |
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| Q |
113 |
gagataagtaaattatagttaagaattgttccaccaaaaacctaatttgaatcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagt |
212 |
Q |
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| T |
1209411 |
aagataagtaaattatagttaaaaattattccaccaaaaacctaatttgagtcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagt |
1209312 |
T |
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| Q |
213 |
ccatcatgttcattttatttttgagagttctca-nnnnnnncctcttgagaggaagttcatgttctcatgagtcttatttcttaattagtatatttagca |
311 |
Q |
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| T |
1209311 |
ccatcatgttcattttatttttgagagttctcattttttttcctcttgagaggaagtccatgttctcatgagtcttatttcttaattagtatatttagca |
1209212 |
T |
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| Q |
312 |
agtgttacatagtagt |
327 |
Q |
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|||||||||||||||| |
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| T |
1209211 |
agtgttacatagtagt |
1209196 |
T |
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