View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6952_high_2 (Length: 535)

Name: NF6952_high_2
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6952_high_2
NF6952_high_2
[»] chr3 (35 HSPs)
chr3 (19-380)||(42168900-42169258)
chr3 (400-518)||(49500084-49500202)
chr3 (401-518)||(42093420-42093537)
chr3 (400-518)||(17109875-17109993)
chr3 (400-514)||(26582857-26582971)
chr3 (390-518)||(38807779-38807907)
chr3 (390-518)||(50645713-50645841)
chr3 (400-514)||(14546081-14546195)
chr3 (400-514)||(27284994-27285108)
chr3 (400-518)||(32315400-32315518)
chr3 (400-518)||(46962606-46962724)
chr3 (400-514)||(52835569-52835683)
chr3 (400-518)||(55092448-55092566)
chr3 (390-518)||(33162338-33162462)
chr3 (447-518)||(52835786-52835857)
chr3 (400-518)||(14545859-14545978)
chr3 (400-518)||(29838318-29838436)
chr3 (445-514)||(49499912-49499981)
chr3 (460-518)||(889212-889270)
chr3 (400-518)||(26582637-26582754)
chr3 (445-514)||(27934520-27934589)
chr3 (445-514)||(38807607-38807676)
chr3 (445-514)||(7029454-7029523)
chr3 (445-514)||(16056417-16056486)
chr3 (445-514)||(21323133-21323202)
chr3 (392-514)||(33162565-33162687)
chr3 (453-514)||(42093640-42093701)
chr3 (453-514)||(46962827-46962888)
chr3 (446-518)||(27285210-27285282)
chr3 (447-514)||(55092278-55092345)
chr3 (445-515)||(49121785-49121855)
chr3 (400-518)||(27934692-27934810)
chr3 (445-514)||(29838539-29838608)
chr3 (400-514)||(32315621-32315734)
chr3 (445-514)||(50645541-50645610)
[»] chr4 (45 HSPs)
chr4 (19-380)||(36074914-36075281)
chr4 (400-518)||(17865217-17865335)
chr4 (400-518)||(4712419-4712536)
chr4 (400-518)||(37815582-37815701)
chr4 (400-518)||(12792596-12792714)
chr4 (400-518)||(32592767-32592885)
chr4 (447-516)||(43750190-43750259)
chr4 (447-514)||(11021744-11021811)
chr4 (445-514)||(2184639-2184708)
chr4 (445-514)||(5721021-5721090)
chr4 (400-518)||(13492908-13493026)
chr4 (400-514)||(13683028-13683142)
chr4 (400-518)||(17107673-17107790)
chr4 (445-518)||(22487461-22487534)
chr4 (400-518)||(26314500-26314617)
chr4 (447-515)||(12792816-12792884)
chr4 (455-518)||(2184473-2184536)
chr4 (399-514)||(37815364-37815479)
chr4 (400-514)||(989320-989434)
chr4 (400-514)||(9301814-9301928)
chr4 (457-518)||(16491888-16491949)
chr4 (445-518)||(16959833-16959906)
chr4 (445-510)||(17107501-17107566)
chr4 (445-514)||(17865045-17865114)
chr4 (445-514)||(43750016-43750085)
chr4 (457-518)||(46481158-46481219)
chr4 (445-513)||(13493130-13493198)
chr4 (462-518)||(13683245-13683301)
chr4 (447-514)||(22487291-22487358)
chr4 (456-514)||(46081619-46081677)
chr4 (445-514)||(46480986-46481055)
chr4 (446-514)||(39385406-39385474)
chr4 (447-518)||(20046043-20046114)
chr4 (399-514)||(16491670-16491785)
chr4 (400-518)||(989102-989217)
chr4 (445-518)||(11021914-11021987)
chr4 (445-514)||(16960009-16960078)
chr4 (445-514)||(26314720-26314789)
chr4 (447-515)||(9301641-9301709)
chr4 (458-516)||(5721195-5721254)
chr4 (452-514)||(4712255-4712316)
chr4 (400-436)||(13683320-13683356)
chr4 (445-514)||(32592988-32593054)
chr4 (457-514)||(6100551-6100608)
chr4 (455-515)||(20045881-20045941)
[»] chr2 (48 HSPs)
chr2 (400-518)||(29683415-29683533)
chr2 (400-518)||(18369037-18369155)
chr2 (400-515)||(4171769-4171884)
chr2 (400-518)||(3948388-3948506)
chr2 (445-518)||(7877393-7877466)
chr2 (404-518)||(10748522-10748636)
chr2 (400-518)||(12806790-12806908)
chr2 (400-518)||(14379137-14379255)
chr2 (400-518)||(28921434-28921552)
chr2 (400-514)||(41594196-41594310)
chr2 (400-518)||(42705193-42705311)
chr2 (446-518)||(3371543-3371615)
chr2 (400-518)||(33940705-33940823)
chr2 (447-518)||(19204833-19204904)
chr2 (400-518)||(2395398-2395516)
chr2 (445-514)||(7877569-7877638)
chr2 (445-514)||(19204661-19204730)
chr2 (400-514)||(30432840-30432954)
chr2 (404-518)||(37608984-37609098)
chr2 (400-518)||(41593975-41594093)
chr2 (446-514)||(12806619-12806687)
chr2 (447-518)||(6163969-6164040)
chr2 (399-514)||(3371325-3371440)
chr2 (445-515)||(6880042-6880112)
chr2 (445-514)||(28921262-28921331)
chr2 (453-518)||(32521716-32521781)
chr2 (446-514)||(13572541-13572609)
chr2 (452-514)||(4171601-4171663)
chr2 (456-514)||(17457963-17458021)
chr2 (400-514)||(2395181-2395295)
chr2 (445-514)||(3948609-3948678)
chr2 (445-514)||(6164143-6164212)
chr2 (445-514)||(6880218-6880287)
chr2 (445-514)||(18369258-18369327)
chr2 (400-518)||(30432620-30432737)
chr2 (445-514)||(38873541-38873610)
chr2 (455-515)||(17457797-17457857)
chr2 (445-514)||(10748739-10748808)
chr2 (400-518)||(13572712-13572830)
chr2 (445-514)||(14379358-14379427)
chr2 (445-514)||(29683245-29683313)
chr2 (457-514)||(30771149-30771206)
chr2 (445-514)||(32521544-32521613)
chr2 (445-514)||(33940922-33940991)
chr2 (445-514)||(37609199-37609269)
chr2 (458-518)||(25318398-25318458)
chr2 (459-514)||(25318539-25318594)
chr2 (477-514)||(42705053-42705090)
[»] scaffold0817 (2 HSPs)
scaffold0817 (400-518)||(4223-4341)
scaffold0817 (445-514)||(4052-4121)
[»] chr6 (31 HSPs)
chr6 (400-518)||(17238275-17238393)
chr6 (390-518)||(8926428-8926558)
chr6 (390-518)||(8936685-8936815)
chr6 (400-518)||(28853726-28853844)
chr6 (445-518)||(30608935-30609008)
chr6 (390-518)||(26272221-26272349)
chr6 (400-518)||(5404811-5404929)
chr6 (400-518)||(9571637-9571755)
chr6 (400-518)||(16525434-16525552)
chr6 (400-518)||(19661374-19661491)
chr6 (445-518)||(31717416-31717489)
chr6 (446-518)||(3345090-3345162)
chr6 (400-516)||(3485017-3485133)
chr6 (445-514)||(29819455-29819524)
chr6 (445-514)||(33783642-33783711)
chr6 (446-518)||(5924068-5924140)
chr6 (447-514)||(19661594-19661661)
chr6 (445-514)||(3484853-3484922)
chr6 (445-514)||(5923896-5923965)
chr6 (445-514)||(8926256-8926325)
chr6 (445-514)||(8936513-8936582)
chr6 (445-514)||(16525262-16525331)
chr6 (445-514)||(30609111-30609180)
chr6 (445-514)||(31717244-31717313)
chr6 (458-516)||(29819629-29819687)
chr6 (453-514)||(17238111-17238172)
chr6 (445-514)||(28853554-28853623)
chr6 (446-518)||(33783467-33783539)
chr6 (445-514)||(3345264-3345333)
chr6 (472-514)||(5404666-5404708)
chr6 (400-481)||(5409173-5409254)
[»] chr5 (33 HSPs)
chr5 (400-518)||(14868914-14869031)
chr5 (400-518)||(3598654-3598772)
chr5 (400-518)||(43196925-43197043)
chr5 (400-513)||(22394148-22394261)
chr5 (447-518)||(10461416-10461487)
chr5 (400-518)||(4122603-4122719)
chr5 (400-515)||(6497436-6497551)
chr5 (400-514)||(3598437-3598551)
chr5 (400-518)||(6542283-6542401)
chr5 (400-518)||(24490868-24490985)
chr5 (409-518)||(15969671-15969780)
chr5 (400-514)||(10461590-10461704)
chr5 (404-514)||(24491088-24491198)
chr5 (446-514)||(5933370-5933438)
chr5 (447-518)||(5933196-5933267)
chr5 (390-518)||(25329111-25329239)
chr5 (447-514)||(43197146-43197213)
chr5 (445-518)||(7133366-7133439)
chr5 (445-514)||(15969499-15969568)
chr5 (445-518)||(18786050-18786123)
chr5 (400-514)||(18786226-18786339)
chr5 (445-514)||(22394369-22394438)
chr5 (453-514)||(29991179-29991240)
chr5 (446-514)||(6542504-6542572)
chr5 (447-514)||(6497263-6497330)
chr5 (445-514)||(14868742-14868811)
chr5 (445-514)||(41137210-41137279)
chr5 (447-518)||(29991343-29991414)
chr5 (447-514)||(40588895-40588961)
chr5 (447-514)||(40589498-40589564)
chr5 (399-514)||(4122822-4122937)
chr5 (472-518)||(41137382-41137428)
chr5 (460-514)||(7133209-7133263)
[»] chr1 (33 HSPs)
chr1 (400-518)||(20061822-20061940)
chr1 (400-518)||(28031888-28032006)
chr1 (400-514)||(50096157-50096271)
chr1 (390-502)||(39027495-39027607)
chr1 (400-518)||(50625007-50625123)
chr1 (400-518)||(37172272-37172390)
chr1 (400-518)||(43191680-43191798)
chr1 (400-518)||(33798-33916)
chr1 (405-518)||(10914015-10914128)
chr1 (390-518)||(42154991-42155118)
chr1 (400-514)||(33581-33695)
chr1 (445-514)||(20062043-20062112)
chr1 (400-514)||(26244573-26244687)
chr1 (400-518)||(26244790-26244908)
chr1 (445-518)||(50096374-50096447)
chr1 (445-514)||(50624835-50624904)
chr1 (446-514)||(14602080-14602148)
chr1 (446-518)||(14602251-14602323)
chr1 (446-518)||(47829203-47829275)
chr1 (445-514)||(28031716-28031785)
chr1 (445-514)||(42154819-42154888)
chr1 (446-514)||(47829032-47829100)
chr1 (447-518)||(12322333-12322404)
chr1 (400-514)||(39288176-39288292)
chr1 (399-514)||(37172493-37172608)
chr1 (445-514)||(10913843-10913912)
chr1 (445-514)||(33619141-33619210)
chr1 (445-514)||(43191901-43191970)
chr1 (399-514)||(12322115-12322230)
chr1 (445-514)||(18963678-18963747)
chr1 (456-518)||(33618976-33619038)
chr1 (460-514)||(51999559-51999613)
chr1 (446-514)||(39288399-39288467)
[»] chr8 (33 HSPs)
chr8 (400-518)||(13154480-13154598)
chr8 (400-518)||(3272961-3273079)
chr8 (400-518)||(9180286-9180404)
chr8 (400-518)||(13405689-13405807)
chr8 (445-515)||(31685915-31685985)
chr8 (390-511)||(2835342-2835462)
chr8 (446-514)||(18764530-18764598)
chr8 (446-518)||(24332503-24332574)
chr8 (447-514)||(6891849-6891916)
chr8 (447-514)||(6943728-6943795)
chr8 (445-514)||(220581-220650)
chr8 (445-514)||(689736-689805)
chr8 (445-514)||(734204-734273)
chr8 (445-514)||(858100-858169)
chr8 (400-518)||(6943898-6944016)
chr8 (445-514)||(13154308-13154377)
chr8 (400-518)||(18764309-18764427)
chr8 (445-514)||(24332331-24332400)
chr8 (445-514)||(26479539-26479608)
chr8 (445-518)||(31186614-31186687)
chr8 (445-514)||(31685739-31685808)
chr8 (445-514)||(31403158-31403227)
chr8 (445-511)||(26479394-26479460)
chr8 (445-514)||(2835194-2835263)
chr8 (445-514)||(9180114-9180183)
chr8 (445-518)||(31402982-31403055)
chr8 (447-514)||(31186445-31186511)
chr8 (472-514)||(3272816-3272858)
chr8 (468-515)||(37586110-37586157)
chr8 (471-514)||(37586262-37586305)
chr8 (472-518)||(6892019-6892065)
chr8 (445-514)||(13405517-13405586)
chr8 (460-515)||(20112660-20112715)
[»] chr7 (31 HSPs)
chr7 (400-518)||(40729304-40729422)
chr7 (400-518)||(42517108-42517226)
chr7 (400-518)||(24380-24498)
chr7 (400-518)||(19157934-19158052)
chr7 (400-518)||(20757333-20757451)
chr7 (400-518)||(44219318-44219436)
chr7 (390-518)||(44483467-44483595)
chr7 (452-518)||(829922-829988)
chr7 (452-518)||(1195102-1195168)
chr7 (446-518)||(19476635-19476707)
chr7 (390-518)||(34595332-34595461)
chr7 (445-514)||(13426537-13426606)
chr7 (445-514)||(19157762-19157831)
chr7 (445-514)||(20757161-20757230)
chr7 (445-514)||(22364896-22364965)
chr7 (446-514)||(40729133-40729201)
chr7 (447-518)||(34487383-34487454)
chr7 (399-514)||(34595564-34595679)
chr7 (445-514)||(24601-24670)
chr7 (445-518)||(31579500-31579573)
chr7 (445-514)||(31579676-31579745)
chr7 (445-514)||(42516936-42517005)
chr7 (446-518)||(22954410-22954482)
chr7 (445-518)||(22364723-22364795)
chr7 (445-514)||(22954576-22954645)
chr7 (445-518)||(35026685-35026758)
chr7 (445-514)||(44219539-44219608)
chr7 (446-514)||(35026514-35026582)
chr7 (453-514)||(44483307-44483368)
chr7 (445-514)||(34487211-34487280)
chr7 (446-514)||(19476465-19476532)
[»] scaffold0170 (2 HSPs)
scaffold0170 (400-518)||(8565-8684)
scaffold0170 (446-514)||(8787-8855)
[»] scaffold0137 (2 HSPs)
scaffold0137 (400-518)||(36791-36907)
scaffold0137 (472-515)||(37009-37052)
[»] scaffold0103 (2 HSPs)
scaffold0103 (400-518)||(43301-43419)
scaffold0103 (445-514)||(43523-43592)
[»] scaffold0021 (2 HSPs)
scaffold0021 (400-517)||(118274-118391)
scaffold0021 (445-506)||(118098-118159)
[»] scaffold0028 (2 HSPs)
scaffold0028 (445-518)||(74155-74228)
scaffold0028 (466-514)||(74005-74053)
[»] scaffold0006 (2 HSPs)
scaffold0006 (390-518)||(212426-212554)
scaffold0006 (392-514)||(212657-212779)
[»] scaffold0167 (1 HSPs)
scaffold0167 (445-514)||(4632-4701)
[»] scaffold0126 (2 HSPs)
scaffold0126 (446-514)||(36239-36307)
scaffold0126 (445-518)||(36063-36136)
[»] scaffold0147 (2 HSPs)
scaffold0147 (399-514)||(25146-25261)
scaffold0147 (445-518)||(25352-25425)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 42169258 - 42168900
Alignment:
Q  19 ctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaacatgaatccagaaggatgaatgtaacaaattcagata 118  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42169258 ctctctacttcttcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaacatgaatccagaaagatgaatgtaacaaattcagata 42169159  T
Q  119 attattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaatcaacactgcattttcctcccccttttcttctctaaaa 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42169158 attattttgtcactttatctctatacaaccaaagtaaccagtaccgctttctctctctaaaatcaacactgcattttcctccctcttttcttctctaaaa 42169059  T
Q  219 ttgggtgctgatgaaatttaaaacgatnnnnnnnnnntggaatttgatggataattacaaatcttgatgttggttgaaacaagcagtggttaggttgtga 318  Q
    |||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  42169058 ttgggtgctgatgaaatttaaaacgat---aaaaaaatggaatttgatggatgattacaaatcttgatgttggttgaaacaagtagtggttaggtagtga 42168962  T
Q  319 tggctgaaaaacgggatgaagagagagaacataggagagagtaaagtaaacatgataaaaaa 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  42168961 tggctgaaaaacgggatgaagagagagaacataggagagagtaaagtaaacataattaaaaa 42168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 49500202 - 49500084
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| ||| |||||| |||||||| ||||||||||        |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  49500202 aaatatttgatattttggttttagtccctgtaaaaatatttttttggttttagtccttgcaaatataaaaaatttggttttggtccttggtattttgttt 49500103  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  49500102 taatccttgtaaaattgat 49500084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 401 - 518
Target Start/End: Original strand, 42093420 - 42093537
Alignment:
Q  401 aatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtttt 500  Q
    ||||||||||||||||  ||||||| ||||||||||        |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  42093420 aatatctgacattttggatttagtccctgtaaaaatatttttttggttttagtctctgcaaatataaaaaatttggttttgatccttggtattttgtttt 42093519  T
Q  501 aatccttgtaaaattgat 518  Q
    | ||||||||||||||||    
T  42093520 agtccttgtaaaattgat 42093537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 17109875 - 17109993
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||| ||  |||||||||        |||||| || ||||||||||||||||||||||||||| |||||||||||||||||    
T  17109875 aaatatctgacattttggttttaatccttgtaaaaatatttttttggttttagtgcctgcaaatataaaaaatttggttttggtccttggtattttgttt 17109974  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  17109975 tagtccttgtaaaattgat 17109993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 26582971 - 26582857
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||||||||||||||| ||||||||||        | |||| ||||||||||||||| || ||||| ||||| |||||||||||||||||    
T  26582971 aaatatctgacattttgattttagtccctgtaaaaatatttttttgattttagtccctgcaaatatagaatatttgattttggtccttggtattttgttt 26582872  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  26582871 taatccttgtaaaat 26582857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 38807907 - 38807779
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| ||||  |    
T  38807907 tagtccctgtaaatatctgacattttgattttagtccctgtaaaaatatatgtttggttttagtccctgcaaatataaaaaatttggttttggtcctctg 38807808  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||| || ||| |||||||||    
T  38807807 tattttattttagtctttgaaaaattgat 38807779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 50645841 - 50645713
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  |||||||||||||||||  |||||||| || |||||||        |||||| |||||||||||||||||||||||||||||| ||||| |    
T  50645841 tagtccctgtaaatatctgacattttagttttagtccctataaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtcctttg 50645742  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    ||||||| |||| ||||||||||||||||    
T  50645741 tattttgatttagtccttgtaaaattgat 50645713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 14546195 - 14546081
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||| |||||||||||||||         ||||| ||||||||||||||| || ||||||||||| ||||| |||||||||||    
T  14546195 aaatatctgacattttggtttcagtcactgtaaaaatattttttgagttttagtccctgcaaatatagaatatttggttttggtcctttgtattttgttt 14546096  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  14546095 taatccttgtaaaat 14546081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 27284994 - 27285108
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| |||||||||||||||  || |||||||        |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  27284994 aaatatctggcattttgattttagttcctataaaaatatttttttggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttt 27285093  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  27285094 taatccttgtaaaat 27285108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 32315400 - 32315518
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        | |||| |||| |||||||||| |||||||||||||| |||||||||||||||||    
T  32315400 aaatatctgacattttggttttagtctctgtaaaaatatttttttgattttagtccttgcaaatatagaaaatttggttttggtccttggtattttgttt 32315499  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||| ||||    
T  32315500 tagtccttgtaaaagtgat 32315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 46962606 - 46962724
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||||||| |||||||||         |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  46962606 aaatatctgatattttggttttagtccctgtaaaaaaaattttttggttttagtccctgcaaatataaaaaatttggttttggtccttgatattttgttt 46962705  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||| ||||||||||||    
T  46962706 tagtccctgtaaaattgat 46962724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 52835569 - 52835683
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| | |||||||||||||| || |||||||        |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  52835569 aaatatctggcgttttgattttagtccctataaaaatatttttttggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttt 52835668  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  52835669 taatccttgtaaaat 52835683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 55092566 - 55092448
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||| || ||||||||||        |||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||    
T  55092566 aaatatctgacattttggttttattctctgtaaaaatatttttttggttttagtctctgcaaatataaaaaatttgattttggtccttggtatattgttt 55092467  T
Q  500 taatccttgtaaaattgat 518  Q
    ||||| |||||||||||||    
T  55092466 taatcattgtaaaattgat 55092448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 33162338 - 33162462
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||||         |||||| ||||||||||||  |||||||||||||||| |||||||    
T  33162338 tagtccccgcaaatatctgacatttt-attttagtctctgtaaaaa---aaaattggttttagtccctgcaaattaaaaaaatttggttttgatccttgg 33162433  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||| ||||||||||||||||    
T  33162434 tattttgttttagtccttgtaaaattgat 33162462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 52835857 - 52835786
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  52835857 ttttagtccctgcaaatataaaaaatttggttttggtccttcgtattttgttttagtccttgtaaaattgat 52835786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 14545859 - 14545978
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaa-aatttggttttgctccttggtattttgtt 498  Q
    ||||||||||||||||| ||||||||  ||||||| |        | |||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  14545859 aaatatctgacattttggttttagtccatgtaaaagtatttttttgattttagtccctgcaaatataaaaaaatttggttttggtccttggtattttgtt 14545958  T
Q  499 ttaatccttgtaaaattgat 518  Q
    ||| ||||||||||||||||    
T  14545959 ttagtccttgtaaaattgat 14545978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 29838318 - 29838436
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||||||| ||| ||||||         ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  29838318 aaatatctgatattttggttttagtccctgcaaaaatatttttttcgttttagtctctgcaaatataaaaaatttggttttggtcctttgtattttgttt 29838417  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  29838418 tagtccttgtaaaattgat 29838436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 49499912 - 49499981
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  49499912 ggttttagtccctgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaat 49499981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 460 - 518
Target Start/End: Original strand, 889212 - 889270
Alignment:
Q  460 aaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  889212 aaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 889270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 26582637 - 26582754
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||||||| ||||||||||        ||| || |||| |||||||||| |||||||||||||| |||||| ||||||||||    
T  26582637 aaatatctgatattttggttttagtccctgtaaaaatattttgttggtgttagtcc-tgcaaatatagaaaatttggttttggtccttgatattttgttt 26582735  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  26582736 tagtccttgtaaaattgat 26582754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 27934520 - 27934589
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  27934520 ggttttagtcccttcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 27934589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 38807607 - 38807676
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  38807607 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgtttcaatccttgtaaaat 38807676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 7029454 - 7029523
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| || | |||||||||||||||||||||||||||    
T  7029454 ggttttagtccctgcaaatatagaatatttggttttggtcttcggtattttgttttaatccttgtaaaat 7029523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 16056417 - 16056486
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||||||||||||    
T  16056417 ggttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaat 16056486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 21323202 - 21323133
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||    
T  21323202 ggttttagtccctgcaaatatagaatatttggttttaatccttggtattttgttttaatccttataaaat 21323133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 33162687 - 33162565
Alignment:
Q  392 gtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggta 491  Q
    |||||| |||||||||||| ||||  |||||||| || |||||||        |||||| |||| |||||||||| || ||||||||||| |||||| ||    
T  33162687 gtccccgtaaatatctgacgttttagttttagtccctataaaaatatttttttggttttagtccttgcaaatatagaatatttggttttggtccttgata 33162588  T
Q  492 ttttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||||    
T  33162587 ttttgtgttaatccttgtaaaat 33162565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 42093701 - 42093640
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||    
T  42093701 tccctgcaaatatagaatatttgattttggtccttggtattttgttttaatccttgtaaaat 42093640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 46962888 - 46962827
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||    
T  46962888 tccctgcaaatatagaatatttggttttggttcttggtattttgttttaatccttgtaaaat 46962827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 27285282 - 27285210
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| ||||||||||||||||||| |||||||||| || ||| |||||||||||| || |||||||||||||    
T  27285282 gttttagtccctgcaaatataaaaagtttggttttggtcattgatattttgttttagtctttgtaaaattgat 27285210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 55092278 - 55092345
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| |||| |||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||    
T  55092278 ttttagtccgtgcaaatatagaatatttggttttggtccttgatattttgttttaatccttgtaaaat 55092345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 515
Target Start/End: Original strand, 49121785 - 49121855
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||| |||| ||||||||||||| |||| |||||| |||||| ||||||||||||||| ||||||||||    
T  49121785 ggttttagtccatgcaaatataaaatatttagttttggtccttgatattttgttttaatcattgtaaaatt 49121855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 27934810 - 27934692
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||| || |||||||| | ||||||||        | |||| ||||||| |||||||||   |||||||||| |||||| ||||||||||    
T  27934810 aaatatctgacattctggttttagtcccagtaaaaatatttttttgattttagtccctgtaaatataaattttttggttttggtccttgttattttgttt 27934711  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  27934710 tagtccttgtaaaattgat 27934692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 29838608 - 29838539
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||| ||| || |||| |||||| ||||||||||||||||||||||||||||||||    
T  29838608 ggttttagtccttgcaaaaatagaatatttagttttggtccttggtattttgttttaatccttgtaaaat 29838539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 32315734 - 32315621
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||||||| ||||||||||        |||||| | || | |||||||| || ||||||||||| |||||||||||||||||    
T  32315734 aaatatctgatattttggttttagtccctgtaaaaat-attttttggttttaggccatacaaatatagaatatttggttttggtccttggtattttgttt 32315636  T
Q  500 taatccttgtaaaat 514  Q
    ||||| |||||||||    
T  32315635 taatctttgtaaaat 32315621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 50645541 - 50645610
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  50645541 ggttttagtccttgcaaaaatagaatatttggttttgatccttagtattttgttttaatccttgtaaaat 50645610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 36075281 - 36074914
Alignment:
Q  19 ctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaacatgaatccagaaggatgaatgtaacaaattcagata 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36075281 ctctctacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaacatgaatccagaaggatgaatgtaacaaattcagata 36075182  T
Q  119 attattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaatcaacactgcattttcctcccccttttcttctctaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36075181 attattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaatcaacactgcattttcctcccccttttcttctctaaaa 36075082  T
Q  219 ttgggtgctgatgaaatttaaaacgatnnnnnnnnnntggaatttgatggataattacaaatcttgatgttggttgaaacaagcagtggttagg------ 312  Q
    ||||||||| |||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||          
T  36075081 ttgggtgcttatgaaatttaaaacgat-aaaaaaaaatggaatttgatggataattacaaatcttgatgttggttgaaacaaatagtggttaggttgtga 36074983  T
Q  313 -ttgtgatggctgaaaaacgggatgaagagagagaacataggagagagtaaagtaaacatgataaaaaa 380  Q
     ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36074982 attgtgatggttgaaaaacaggatgaagagagagaacataggagagagtaaagtaaacataataaaaaa 36074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 17865335 - 17865217
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| || ||||||||||||||    
T  17865335 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtctttggtattttgttt 17865236  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  17865235 taatccttgtaaaattgat 17865217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 4712536 - 4712419
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| || |||||||        |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4712536 aaatatctgacattttggttttagtccctataaaaat-attttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 4712438  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  4712437 taatccttgtaaaattgat 4712419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 37815701 - 37815582
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnn-ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    ||||||||||||||||| |||||||| ||||||||||         |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  37815701 aaatatctgacattttggttttagtccctgtaaaaatattttttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttatt 37815602  T
Q  499 ttaatccttgtaaaattgat 518  Q
    ||| ||||||||||||||||    
T  37815601 ttagtccttgtaaaattgat 37815582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 12792596 - 12792714
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| ||||||| |||||||| ||||||||||        | |||| |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  12792596 aaatatctgtcattttggttttagtccctgtaaaaatatttttttgattttagtccctgcaaatataaaaaatttgattttggtccttgatattttgttt 12792695  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  12792696 taatccttgtaaaattgat 12792714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 32592767 - 32592885
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| ||||||||  |||||||||        |||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  32592767 aaatatttgacattttggttttagtccttgtaaaaatatttttttggttttagtccctgcaaatataaaaattttggttttggtccttgatattttgttt 32592866  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  32592867 tagtccttgtaaaattgat 32592885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 43750259 - 43750190
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattg 516  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  43750259 ttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattg 43750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 11021744 - 11021811
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11021744 ttttggtccctgcaaatataaaatatttggttttggtccttggtattttgttttaatccttgtaaaat 11021811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 2184708 - 2184639
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  2184708 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 2184639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 5721021 - 5721090
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  5721021 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 5721090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 13492908 - 13493026
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||| ||||| |||||||| || |||||||        |||||| ||||||||||||| |||||| ||||||||| || ||||||||||||||    
T  13492908 aaatatctgactttttggttttagtccctctaaaaatatttttttggttttagtccctgcaaataaaaaaaaattggttttggtctttggtattttgttt 13493007  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  13493008 tattccttgtaaaattgat 13493026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 13683028 - 13683142
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| || |||||||        |||||| ||||||| ||||||| || ||||||||||| |||||||||||||| ||    
T  13683028 aaatatctgacattttggttttagtccctataaaaatatttttttggttttagtccctgtaaatatagaatatttggttttggtccttggtattttgctt 13683127  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  13683128 taatccttgtaaaat 13683142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 17107790 - 17107673
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||||||| |||||||||        | |||| |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  17107790 aaatatctgacattttggttttagtca-tgtaaaaatatttttttgattttagtccctgcaaatataaaaaaattgattttggtccttggtattttgttt 17107692  T
Q  500 taatccttgtaaaattgat 518  Q
    || |||||||| |||||||    
T  17107691 tagtccttgtagaattgat 17107673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 22487534 - 22487461
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  22487534 ggttttagtccttgcaaatatgaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 22487461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 26314500 - 26314617
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| |||||||| |        |||||| |||||||||||||||||||||| | ||||| |||||||||||||||||    
T  26314500 aaatatctgacattttggttttagtccctgtaaaactatttttttggttttagtccctgcaaatataaaaaatt-gtttttggtccttggtattttgttt 26314598  T
Q  500 taatccttgtaaaattgat 518  Q
    || |||||||||| |||||    
T  26314599 tagtccttgtaaagttgat 26314617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 447 - 515
Target Start/End: Complemental strand, 12792884 - 12792816
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  12792884 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaatt 12792816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 2184473 - 2184536
Alignment:
Q  455 cctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  2184473 cctgcaaatattaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 2184536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 514
Target Start/End: Original strand, 37815364 - 37815479
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||| |||||||  ||||||| || |||||||        |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||    
T  37815364 taaatatctggcattttggatttagtccctataaaaatatttttttggttttagtccatgcaaatatagaatatttggttttggtccttggtattttgtt 37815463  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||||||||||    
T  37815464 ttaatccttgtaaaat 37815479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 989434 - 989320
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||| ||||| |||||||| || |||||||        |||||| ||||||||| ||||| || ||||||||||| || ||||||||||||||    
T  989434 aaatatctgacgttttggttttagtccctataaaaatatttttttggttttagtccctgcagatatagaatatttggttttggtctttggtattttgttt 989335  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  989334 taatccttgtaaaat 989320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 9301928 - 9301814
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| | |||||||||||||| || |||||||        |||||| |||| |||||||||| || ||||| ||||| |||||||||||||||||    
T  9301928 aaatatctggcgttttgattttagtctctataaaaatatttttttggttttagtccatgcaaatatagaatatttgattttggtccttggtattttgttt 9301829  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  9301828 taatccttgtaaaat 9301814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 16491949 - 16491888
Alignment:
Q  457 tgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  16491949 tgcaaatataaaaaaattggttttggtccttggtattttgttttagtccttgtaaaattgat 16491888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 16959833 - 16959906
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||| ||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  16959833 ggttttagtccatgcaaatataaaaaatttggttttggtcctttgtattttgatttagtccttgtaaaattgat 16959906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 17107501 - 17107566
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgta 510  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  17107501 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgta 17107566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 17865045 - 17865114
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||    
T  17865045 ggttttagtccctgcaaatatagaatatttggttttggtccttgatattttgttttaatccttgtaaaat 17865114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 43750016 - 43750085
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||    
T  43750016 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgctttaatccttgtaaaat 43750085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 46481219 - 46481158
Alignment:
Q  457 tgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||    
T  46481219 tgcaaatataaaaaatttggttatggtccttggtattttgttttagtccttgtaaaattgat 46481158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 445 - 513
Target Start/End: Complemental strand, 13493198 - 13493130
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaa 513  Q
    |||||| ||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||    
T  13493198 ggttttagtccctgcaaatatagaatatttggttttgatccatggtattttgttttaatccttgtaaaa 13493130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 13683301 - 13683245
Alignment:
Q  462 atataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  13683301 atataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 13683245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 22487291 - 22487358
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  22487291 ttttagtctctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 22487358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 456 - 514
Target Start/End: Complemental strand, 46081677 - 46081619
Alignment:
Q  456 ctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  46081677 ctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 46081619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 46480986 - 46481055
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  46480986 ggttttagtccctacaaatatagaatatttggttttggtccttggtattttgttttaatcattgtaaaat 46481055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 39385474 - 39385406
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| |||||||||||||||||| ||||||||||  || ||||||| |||||||||||||||||||||    
T  39385474 gttttagtccctgcaaatataaaatatttggtttttgtctttggtatattgttttaatccttgtaaaat 39385406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 20046114 - 20046043
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||||  ||||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||    
T  20046114 ttttagtccctgtcaatataaaaaatttggttttggtccttgctattttgttttagttcttgtaaaattgat 20046043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 514
Target Start/End: Original strand, 16491670 - 16491785
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||| |||||| ||||||||  || |||||||        ||||||  |||||||||||||| || ||||||||||| ||||||||||||| ||    
T  16491670 taaatatctggcattttaattttagttcctataaaaatatttttttggttttaatccctgcaaatatagaatatttggttttggtccttggtattttatt 16491769  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||| ||||||    
T  16491770 ttaatccttataaaat 16491785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 989102 - 989217
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||    
T  989102 aaatatctgacattttggttttagtc-ctgtaaaaatatttttttggttttagtcc-tgtaaatataaaaaaattggttttgatcctt-gtattttgttt 989198  T
Q  500 taatccttgtaaaattgat 518  Q
     | ||||||||||||||||    
T  989199 cagtccttgtaaaattgat 989217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 11021987 - 11021914
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||| | ||||||||||||||||| ||||| |||| |||||||||||||| || |||||||||||||    
T  11021987 ggttttagtccttacaaatataaaaaatttgattttggtcctcggtattttgttttagtctttgtaaaattgat 11021914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 16960078 - 16960009
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  16960078 ggttttagtccttgcaaaaatagaatatttggttttgatccttagtattttgttttaatccttgtaaaat 16960009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 26314789 - 26314720
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||| | |||||||||||||||||||||||  |||||||    
T  26314789 ggttttagtccctgcaaatatagaatatttggtttagatccttggtattttgttttaatccacgtaaaat 26314720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 515
Target Start/End: Original strand, 9301641 - 9301709
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||| |||||| |||| |||||||||||||||||| ||||||  ||||||||||| |||||||||||||    
T  9301641 ttttagtcccttcaaacataaaaaatttggttttggtccttgaaattttgttttagtccttgtaaaatt 9301709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 5721254 - 5721195
Alignment:
Q  458 gcaaatataaaaaatttggtttt-gctccttggtattttgttttaatccttgtaaaattg 516  Q
    ||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||||    
T  5721254 gcaaatataaaaaatttggtttttggtcattggtattttgttttagtccttgtaaaattg 5721195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 4712255 - 4712316
Alignment:
Q  452 gtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||| ||||||    
T  4712255 gtccctgcaaatatagaatatttggttttggtccttggtattttg-tttaatccttataaaat 4712316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 13683356 - 13683320
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaat 436  Q
    |||||||||||||||||||||||||| ||||||||||    
T  13683356 aaatatctgacattttgattttagtccctgtaaaaat 13683320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 32593054 - 32592988
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || |||| |||||| ||   |||||||||||||||||||| ||||||    
T  32593054 ggttttagtccctgcaaatatagaatatttagttttggtc---ggtattttgttttaatccttataaaat 32592988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 514
Target Start/End: Complemental strand, 6100608 - 6100551
Alignment:
Q  457 tgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||| || || ||||||    
T  6100608 tgcaaatatagaaaatttcattttggtccttggtattttgttttagtctttataaaat 6100551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 20045881 - 20045941
Alignment:
Q  455 cctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||||||||| || |||| |||||| || ||||| ||||||||||||| || |||||||    
T  20045881 cctgcaaatatataatatttagttttggtctttggtgttttgttttaatctttataaaatt 20045941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 29683533 - 29683415
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||||||||||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  29683533 aaatatctgacattttgattttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 29683434  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  29683433 tagtccttgtaaaattgat 29683415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 18369037 - 18369155
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| || ||||||||||||||    
T  18369037 aaatatctgacattttggttttagtccctgtaaaaatattttttgggttttagtccctgcaaatataaaaaatttggttttggtctttggtattttgttt 18369136  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  18369137 tagtccttgtaaaattgat 18369155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 515
Target Start/End: Complemental strand, 4171884 - 4171769
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| | ||||||||        |||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  4171884 aaatatctgacattttggttttagtctcggtaaaaatatttttttggttttagtcccagcaaatataaaaaatttggttttggtccttggtaatttgttt 4171785  T
Q  500 taatccttgtaaaatt 515  Q
    ||||||||||||||||    
T  4171784 taatccttgtaaaatt 4171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 3948388 - 3948506
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||| |||||||||| ||||||||| || |||||||        |||||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  3948388 aaatacctgacattttaattttagtccctataaaaatatttttttggttttagtccctgcaaatataaaaaatttggtttcggtccttggtattttgttt 3948487  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  3948488 tagtccttgtaaaattgat 3948506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 7877393 - 7877466
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  7877393 ggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 7877466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 10748522 - 10748636
Alignment:
Q  404 atctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaat 503  Q
    ||||||||||||| |||||||| ||||||||||        ||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  10748522 atctgacattttggttttagtccctgtaaaaatatttttttggttttaatccctgcaaatataaaaaatttggttttggtccttggtactttgttttagt 10748621  T
Q  504 ccttgtaaaattgat 518  Q
    |||||||||||||||    
T  10748622 ccttgtaaaattgat 10748636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 12806908 - 12806790
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||| |||||||| |||||||| | ||||||||        |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12806908 aaatatctaacattttggttttagtccccgtaaaaatatttttttggttttagtcactgcaaatataaaaaatttggttttggtccttggtattttgttt 12806809  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  12806808 tagtccttgtaaaattgat 12806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 14379137 - 14379255
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||    
T  14379137 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatgtaaaaaatttggttttggtcctttgtattttgatt 14379236  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  14379237 tagtccttgtaaaattgat 14379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 28921552 - 28921434
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| ||||| || ||||||||||        |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  28921552 aaatatatgacattttggttttaatccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccttgatattttgttt 28921453  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  28921452 tagtccttgtaaaattgat 28921434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 41594310 - 41594196
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||| ||||||||||| || ||| ||||||||||    
T  41594310 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaatatttggttttggtcattgatattttgttt 41594211  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  41594210 taatccttgtaaaat 41594196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 42705311 - 42705193
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||||||  ||||||| ||||||||||        |||||| |||  |||||||||||||||||||||||||  ||||||||||||||||    
T  42705311 aaatatctgacattttggatttagtctctgtaaaaatatttttttggttttagtcagtgcaaatataaaaaatttggttttggaccttggtattttgttt 42705212  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  42705211 taatccttgtaaaattgat 42705193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 3371615 - 3371543
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  3371615 gttttagtccctgcaaatataaaaaatttggttttgatccttggtattttgttttagtccttgtaaaattgat 3371543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 33940705 - 33940823
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||| ||||||||||||||||| ||||||||||         ||||| || ||||||||||||||||||||||||||| |||||| ||||||||||    
T  33940705 aaatatcttacattttgattttagtccctgtaaaaatatttttttagttttagttcctgcaaatataaaaaatttggttttggtccttgatattttgttt 33940804  T
Q  500 taatccttgtaaaattgat 518  Q
    |  ||||||||||||||||    
T  33940805 ttgtccttgtaaaattgat 33940823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 19204904 - 19204833
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  19204904 ttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttaatacttgtaaaaatgat 19204833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 2395516 - 2395398
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||         |||||  ||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  2395516 aaatatctgacattttggttttagtccctgtaaaaatattttttttgttttaatccctgcaaatataaaaaatttgattttggtccttgatattttgttt 2395417  T
Q  500 taatccttgtaaaattgat 518  Q
     | ||||||||||||||||    
T  2395416 aagtccttgtaaaattgat 2395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 7877638 - 7877569
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  7877638 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 7877569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 19204661 - 19204730
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  19204661 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 19204730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 30432954 - 30432840
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||| ||  |||||||||| || ||| ||||||||||    
T  30432954 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatatagaatttttggttttggtctttgttattttgttt 30432855  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  30432854 taatccttgtaaaat 30432840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 37608984 - 37609098
Alignment:
Q  404 atctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaat 503  Q
    ||||||||||||| |||||||||||| ||||||        |  ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||  |    
T  37608984 atctgacattttggttttagtcactggaaaaataattttttgtgtttagtccttgcaaatataaaaaatttggttttggtccttggtattttgtttttgt 37609083  T
Q  504 ccttgtaaaattgat 518  Q
    |||||||||||||||    
T  37609084 ccttgtaaaattgat 37609098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 41593975 - 41594093
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||||||| ||||||||||        |||||| || |||||||||||| |||||||||||||| |||||| ||||||||||    
T  41593975 aaatatctgatattttggttttagtccctgtaaaaatatttttttggttttagttcctgcaaatatagaaaatttggttttggtccttgatattttgttt 41594074  T
Q  500 taatccttgtaaaattgat 518  Q
    || || |||||||||||||    
T  41594075 tagtctttgtaaaattgat 41594093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 12806619 - 12806687
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  12806619 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaat 12806687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 6163969 - 6164040
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  6163969 tttttgtctctgcaaatataaaaaatttagttttggtccttggtattttgttttagtccttgtaaaattgat 6164040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 514
Target Start/End: Original strand, 3371325 - 3371440
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||| | ||||| |||||||| ||||||||||        |||||| || |||||||||||| || |||| |||||| ||||||||||||||||    
T  3371325 taaatatctggcgttttggttttagtccctgtaaaaatatttttttggttttagttcctgcaaatatagaatatttagttttggtccttggtattttgtt 3371424  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||||||||||    
T  3371425 ttaatccttgtaaaat 3371440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 445 - 515
Target Start/End: Original strand, 6880042 - 6880112
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  6880042 ggttttagtccctgcaaatataaaaaatttgattttggtccttggtattttgttttagtccatgtaaaatt 6880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 28921262 - 28921331
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||    
T  28921262 ggttttagtccctgcaaatatagaatatttgattttggtccttggtattttgttttaatccttgtaaaat 28921331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 518
Target Start/End: Complemental strand, 32521781 - 32521716
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||    
T  32521781 tccctgcaaatataaaaaatttggttttggtccttgatattttgtttttgtccttgtaaaattgat 32521716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 13572541 - 13572609
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||    
T  13572541 gttttagtccctgcaaatatagaatgtttggttttggtccttggtattttgttttaatccttgtaaaat 13572609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 4171601 - 4171663
Alignment:
Q  452 gtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||    
T  4171601 gtccctgcaaatatagaacatttggttttggtctttggtattttgttttaatccttgtaaaat 4171663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 456 - 514
Target Start/End: Complemental strand, 17458021 - 17457963
Alignment:
Q  456 ctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  17458021 ctgcaaatataaaatatttagttttggtccttggtattttgttttaatccttgtaaaat 17457963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 2395181 - 2395295
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| | |||||||||||||| || |||||||        |||||| ||||||||||||||| || ||||||||||  ||||||||||||| |||    
T  2395181 aaatatctggcgttttgattttagtccctataaaaatatttttttggttttagtccctgcaaatatagaatatttggttttagtccttggtattttattt 2395280  T
Q  500 taatccttgtaaaat 514  Q
    || ||||||||||||    
T  2395281 tagtccttgtaaaat 2395295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 3948678 - 3948609
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||  |||||||||||||||||||||||||    
T  3948678 ggttttagtccctgcaaatatagaatatttggttttggtcctttatattttgttttaatccttgtaaaat 3948609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 6164212 - 6164143
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||| ||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  6164212 ggttttagtcccagcaaatatagaatatttggttttggtccttagtattttgttttaatccttgtaaaat 6164143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 6880287 - 6880218
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  6880287 ggttttagtctctgcaaatatagaatatttggttttggtccttggtattttgttttaatcattgtaaaat 6880218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 18369327 - 18369258
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||||||||||||    
T  18369327 ggttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaat 18369258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 30432620 - 30432737
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| |||||||| |        | |||| ||||||| ||| | |||| ||||||||||| |||||||||||||||||    
T  30432620 aaatatctgacattttggttttagtccctgtaaaagtatttttttgattttagtccctgtaaaaacaaaa-atttggttttggtccttggtattttgttt 30432718  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  30432719 tagtccttgtaaaattgat 30432737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 38873541 - 38873610
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||    
T  38873541 ggttttagtccttgcaaatatagaatatttggttttggtccttggtattttgttttaattcttgtaaaat 38873610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 17457797 - 17457857
Alignment:
Q  455 cctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||    
T  17457797 cctgcaaatataaaaaattaggttttggtccttgatattttgttttagtccttgtaaaatt 17457857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 10748808 - 10748739
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||| | ||||||| || ||||||||||| || |||||||||||||||||||||||||||||    
T  10748808 ggttttagtcccagtaaatatagaatatttggttttggtcattggtattttgttttaatccttgtaaaat 10748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 13572830 - 13572712
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| ||||| || ||||||||||        |||||| ||||| |||||||||||||||||| |||||   ||| |||| ||||||    
T  13572830 aaatatatgacattttggttttaatccctgtaaaaatatttttttggttttagtcccagcaaatataaaaaatttgattttggcactttgtatattgttt 13572731  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  13572730 tagtccttgtaaaattgat 13572712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 14379427 - 14379358
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||| ||| || ||||||||||  ||||||||||||||||||||||||||||||||    
T  14379427 ggttttagtccttgcaaaaatagaatatttggtttttgtccttggtattttgttttaatccttgtaaaat 14379358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 29683245 - 29683313
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| | ||||||||||||| || ||||||||| || |||||||||||||||||||||||||||||||    
T  29683245 ggttttagcccctgcaaatatagaatatttggtttggc-ccttggtattttgttttaatccttgtaaaat 29683313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 30771149 - 30771206
Alignment:
Q  457 tgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  30771149 tgcaaaaatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 30771206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 32521544 - 32521613
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| || |||||||||| ||||||||||| || ||||||||||||||||||| |||||||||    
T  32521544 ggttttagtccttgtaaatataaaatatttggttttggtctttggtattttgttttaatctttgtaaaat 32521613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 33940991 - 33940922
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||||| ||||||    
T  33940991 ggttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttataaaat 33940922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 37609269 - 37609199
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttg-ttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||||    
T  37609269 ggttttagtccctgcaaatatagaatatttggttttggtccttggtttttagtttttaatccttgtaaaat 37609199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 518
Target Start/End: Original strand, 25318398 - 25318458
Alignment:
Q  458 gcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||| ||||||||| |||||| |||||||||||  ||||| ||||||||||    
T  25318398 gcaaatataaaaaaattggttttggtccttgatattttgtttttgtccttataaaattgat 25318458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 25318594 - 25318539
Alignment:
Q  459 caaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||| || ||||| ||||| || |||||||||||||||||||||||||||||    
T  25318594 caaatatagaatatttgattttggtctttggtattttgttttaatccttgtaaaat 25318539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 42705053 - 42705090
Alignment:
Q  477 ttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  42705053 ttttggtccttcgtattttgttttaatccttgtaaaat 42705090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 4341 - 4223
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4341 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 4242  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  4241 tagtccttgtaaaattgat 4223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 4052 - 4121
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  4052 ggttttagtccctgtaaatatagaaaatttggttttggtccttggtattttgttttaatccttgtaaaat 4121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 17238393 - 17238275
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  17238393 aaatatctgacattttggttttagtccctgtaaaaataattttttggttttagtccctgcaaatatagaaaatttggttttggtccttggtattttgttt 17238294  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  17238293 tagtccttgtaaaattgat 17238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 8926558 - 8926428
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| ||||| |    
T  8926558 tagtcccggtaaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtcctttg 8926459  T
Q  490 --tattttgttttaatccttgtaaaattgat 518  Q
      |||||||||||| ||||||||||||||||    
T  8926458 tatattttgttttagtccttgtaaaattgat 8926428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 8936815 - 8936685
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| ||||| |    
T  8936815 tagtcccggtaaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtcctttg 8936716  T
Q  490 --tattttgttttaatccttgtaaaattgat 518  Q
      |||||||||||| ||||||||||||||||    
T  8936715 tatattttgttttagtccttgtaaaattgat 8936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 28853844 - 28853726
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| || |||||||        |||||| || ||||||||||||||||||||||||||| |||||| ||||||||||    
T  28853844 aaatatctgacattttggttttagtccctataaaaatatttttttggttttagttcctgcaaatataaaaaatttggttttggtccttgatattttgttt 28853745  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  28853744 tagtccttgtaaaattgat 28853726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 30608935 - 30609008
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  30608935 ggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 30609008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 26272349 - 26272221
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  |||||||||||||||||| |||||||| || |||||||        |||||| || ||||||||||||||||||||| ||||| |||||||    
T  26272349 tagtccctgtaaatatctgacattttggttttagtccctataaaaatatatttttggttttagttcctgcaaatataaaaaatttgattttggtccttgg 26272250  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    ||| |||||||| ||||||||||||||||    
T  26272249 tatattgttttagtccttgtaaaattgat 26272221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 5404929 - 5404811
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| || |||||||        | |||| |||||||||||||||||||||||||||||| || || |||||||||||    
T  5404929 aaatatctgacattttggttttagtctctataaaaatatttttttgattttagtccctgcaaatataaaaaatttggttttggtcattagtattttgttt 5404830  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  5404829 tagtccttgtaaaattgat 5404811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 9571755 - 9571637
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||  |||||||| ||||||||||        |||||| |||||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  9571755 aaatatctgacattttagttttagtccctgtaaaaatatttttttggttttagtccctgcaaatatgaaaaatttgattttgatccttcgtattttgttt 9571656  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  9571655 tagtccttgtaaaattgat 9571637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 16525552 - 16525434
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||||||  |||||||  |||||||||         ||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  16525552 aaatatctgacattttggatttagtccttgtaaaaatattttttttgttttagtccctgtaaatataaaaaatttggttttggtccttcgtattttgttt 16525453  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  16525452 taatccttgtaaaattgat 16525434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 19661374 - 19661491
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||  ||||||||||        |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  19661374 aaatatctgacattttggttttagtttctgtaaaaat-attttttggttttagtccctgcaaatataaaaaatttgattttggtccttggtattttgttt 19661472  T
Q  500 taatccttgtaaaattgat 518  Q
    || || |||||||||||||    
T  19661473 tagtctttgtaaaattgat 19661491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 31717489 - 31717416
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  31717489 ggttttagtccctgcaaatataacaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 31717416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 3345090 - 3345162
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  3345090 gttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttacttcttgtaaaattgat 3345162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 516
Target Start/End: Complemental strand, 3485133 - 3485017
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| |||||||| ||| ||||||        | |||| |||||||||||||||||||||||||||||| || ||||||||||||||    
T  3485133 aaatatgtgacattttggttttagtccctgcaaaaatatttttttgattttagtccctgcaaatataaaaaatttggttttggtctttggtattttgttt 3485034  T
Q  500 taatccttgtaaaattg 516  Q
    || ||||||||||||||    
T  3485033 tagtccttgtaaaattg 3485017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 29819455 - 29819524
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  29819455 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 29819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 33783711 - 33783642
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  33783711 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 33783642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 5924140 - 5924068
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  5924140 gttttagtccctacaaatataaaaaatttggttttggtcctttgtattttgttttagtccttgtaaaattgat 5924068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 19661661 - 19661594
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  19661661 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 19661594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 3484853 - 3484922
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  3484853 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatcattgtaaaat 3484922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 5923896 - 5923965
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  5923896 ggttttagtccctgcaaaaatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 5923965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 8926256 - 8926325
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  8926256 ggttttagtccctgcaaaaatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 8926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 8936513 - 8936582
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  8936513 ggttttagtccctgcaaaaatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 8936582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 16525262 - 16525331
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||    
T  16525262 ggttttagtccctgcaaatataaaatatttggtttttatctttggtattttgttttaatccttgtaaaat 16525331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 30609180 - 30609111
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  30609180 ggttttagtccatgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaat 30609111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 31717244 - 31717313
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  31717244 ggttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 31717313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 29819687 - 29819629
Alignment:
Q  458 gcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattg 516  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  29819687 gcaaatataaaaaatttggttttggtcattggtattttgttttagtccttgtaaaattg 29819629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 17238111 - 17238172
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  17238111 tccctacaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 17238172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 28853554 - 28853623
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || |||| |||||| ||||||||||||||||||||||||| ||||||    
T  28853554 ggttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttctaaaat 28853623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 33783467 - 33783539
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||| ||||||||||||||||||||||||| | |||| |||||||||||  ||||||||||||||||    
T  33783467 gttttagtccttgcaaatataaaaaatttggttttggttcttgatattttgtttttgtccttgtaaaattgat 33783539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 3345333 - 3345264
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| || |||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  3345333 ggttttagttcctgtaaatatagaacatttggttttggtccttagtattttgttttaatccttgtaaaat 3345264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 472 - 514
Target Start/End: Original strand, 5404666 - 5404708
Alignment:
Q  472 tttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  5404666 tttggttttggtccttggtattttgttttaatccttgtaaaat 5404708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 5409254 - 5409173
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttg 481  Q
    ||||||||||||||||| |||||||| || |||||||        | |||| ||||||||||||||||||||||||||||||    
T  5409254 aaatatctgacattttggttttagtctctataaaaatatttttttgattttagtccctgcaaatataaaaaatttggttttg 5409173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 14869031 - 14868914
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||||||||||||||        |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  14869031 aaatatctgacattttggttttagtcactgtaaaaatatttttttggttttagtccctgcaaatataaaaa-tttggttttgatccttggtattttgttt 14868933  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  14868932 tagtccttgtaaaattgat 14868914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 3598772 - 3598654
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||  ||||||||||||| |||||||||||||||||    
T  3598772 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataggaaatttggttttggtccttggtattttgttt 3598673  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  3598672 tagtccttgtaaaattgat 3598654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 43196925 - 43197043
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||||||||||| |||||| ||||| || ||||||||    
T  43196925 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttagttttggtccttagtgttttgttt 43197024  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  43197025 tagtccttgtaaaattgat 43197043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 513
Target Start/End: Original strand, 22394148 - 22394261
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| ||| || ||||||||||    
T  22394148 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccctgatattttgttt 22394247  T
Q  500 taatccttgtaaaa 513  Q
    || |||||||||||    
T  22394248 tagtccttgtaaaa 22394261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 10461416 - 10461487
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  10461416 ttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 10461487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 4122603 - 4122719
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| ||||||||||||||||||| |||||||||         | |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4122603 aaatatttgacattttgattttagtccctgtaaaaa--aaaaattgattttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 4122700  T
Q  500 taatccttgtaaaattgat 518  Q
    || || |||||||||||||    
T  4122701 tagtctttgtaaaattgat 4122719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 400 - 515
Target Start/End: Complemental strand, 6497551 - 6497436
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        | |||| || ||||||||||||||||||||||||||| |||||| ||||||||||    
T  6497551 aaatatctgacattttggttttagtccctgtaaaaatatttttttgattttagttcctgcaaatataaaaaatttggttttgatccttgatattttgttt 6497452  T
Q  500 taatccttgtaaaatt 515  Q
    || |||||||||||||    
T  6497451 tagtccttgtaaaatt 6497436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 3598437 - 3598551
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||||||||||  ||||||| ||||||||||        |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  3598437 aaatatctgacattttggatttagtccctgtaaaaatatttttttggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttt 3598536  T
Q  500 taatccttgtaaaat 514  Q
    |||| ||||||||||    
T  3598537 taattcttgtaaaat 3598551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 6542283 - 6542401
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| ||||||||  |||||||||        |||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||    
T  6542283 aaatatctgatattttggttttagtccatgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttgattttgatccttggtattttattt 6542382  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  6542383 tagtccttgtaaaattgat 6542401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 24490868 - 24490985
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||| |||||||||||||| || | ||||||||||||    
T  24490868 aaatatctgacattttggttttagtccctgtaaaaat-attttttggttttagtccctgcaaatatagaaaatttggttttgatcatcggtattttgttt 24490966  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  24490967 tagtccttgtaaaattgat 24490985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 518
Target Start/End: Complemental strand, 15969780 - 15969671
Alignment:
Q  409 acattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttg 508  Q
    ||||||||||||||||| ||||||||||        | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  15969780 acattttgattttagtccctgtaaaaataattttttgattttagtccctgcaaatataaaaaatttggttttggtccttggtattttgtttaagttcttg 15969681  T
Q  509 taaaattgat 518  Q
    ||||||||||    
T  15969680 taaaattgat 15969671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 10461704 - 10461590
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| | |||||||||||||| || |||||||        |||||| ||||||||||||||| || ||||||||||| || ||||||||||||||    
T  10461704 aaatatctggcgttttgattttagtccctataaaaatatttttttggttttagtccctgcaaatatagaatatttggttttggtcattggtattttgttt 10461605  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  10461604 taatccttgtaaaat 10461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 24491198 - 24491088
Alignment:
Q  404 atctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaat 503  Q
    ||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||| || ||||||||||| |||||| |||||||||||| |    
T  24491198 atctgacattttggttttagtccctgtaaaaatatttgtttggttttagtccctgcaaatatagaatatttggttttggtccttgatattttgttttagt 24491099  T
Q  504 ccttgtaaaat 514  Q
    |||||||||||    
T  24491098 ccttgtaaaat 24491088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 5933438 - 5933370
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  5933438 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 5933370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 5933196 - 5933267
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||    
T  5933196 ttttagtccctgcaaatataaaatatttggttttggtctttggtattttgttttagtccttgtaaaattgat 5933267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 25329111 - 25329239
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  |||||||||| ||||||||||||||  ||||||||||         ||||| |||||| ||||||||||||||||| ||||| ||||| |    
T  25329111 tagtccccgcaaatatctgatattttgattttagttcctgtaaaaatatattttttgttttagtccctacaaatataaaaaatttgattttggtccttcg 25329210  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||| ||||||| ||||||||||||||||    
T  25329211 tattatgttttagtccttgtaaaattgat 25329239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 43197213 - 43197146
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  43197213 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 43197146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 7133439 - 7133366
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  7133439 ggttttagtccctgcaaatataaaatttttggttttggtccttggtatttttttttagtccttgtaaaattgat 7133366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 15969499 - 15969568
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  15969499 ggttttagtctctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 15969568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 18786050 - 18786123
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  18786050 ggttttagtccttgcaaatatagaatatttggttttggtccttggtattttgttttagtccttgtaaaattgat 18786123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 514
Target Start/End: Complemental strand, 18786339 - 18786226
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| | ||||| |||||||| ||||||||||        |||||| |||| |||||||||| || ||||||||||| |||||||||||||||||    
T  18786339 aaatatctggcgttttggttttagtccctgtaaaaatatttttttggttttagtcc-tgcaaatatagaatatttggttttggtccttggtattttgttt 18786241  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  18786240 taatccttgtaaaat 18786226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 22394438 - 22394369
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  22394438 ggttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 22394369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 29991179 - 29991240
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  29991179 tccctgcaaatataaaatatttggttttggttcttggtattttgttttaatccttgtaaaat 29991240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 6542572 - 6542504
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||    
T  6542572 gttttagtccctgcaaatatagaatatttggttttagtccttggtattttgttttaatccttgtaaaat 6542504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 6497263 - 6497330
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6497263 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttataaaat 6497330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 14868742 - 14868811
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  14868742 ggttttagtcactgcaaatatagaatatttggttttggtccttagtattttgttttaatccttgtaaaat 14868811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 41137210 - 41137279
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||    
T  41137210 ggttttagtccttgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaat 41137279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 29991414 - 29991343
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||| ||||||||||||||||| ||||| || ||| |||||||||||| ||||||||||||||||    
T  29991414 ttttagtccctacaaatataaaaaatttgattttggtctttgatattttgttttagtccttgtaaaattgat 29991343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 40588961 - 40588895
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||    
T  40588961 ttttagtccctgcaaatataaaatatttggttt-gatccttggtattttgttttaattcttgtaaaat 40588895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 40589564 - 40589498
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||    
T  40589564 ttttagtccctgcaaatataaaatatttggttt-gatccttggtattttgttttaattcttgtaaaat 40589498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 514
Target Start/End: Complemental strand, 4122937 - 4122822
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||| | ||||| |||||||| || |||||||        |||||| ||||||| ||||||| || ||||||||||| |||||| |||||||||    
T  4122937 taaatatctggcgttttgcttttagtccctataaaaatatttttttggttttagtccctgtaaatatagaatatttggttttggtccttgatattttgtt 4122838  T
Q  499 ttaatccttgtaaaat 514  Q
    |||||||| |||||||    
T  4122837 ttaatcctagtaaaat 4122822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 41137428 - 41137382
Alignment:
Q  472 tttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||    
T  41137428 tttggttttagtccttggtattttgttttagtccttgtaaaattgat 41137382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 7133209 - 7133263
Alignment:
Q  460 aaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||| || ||||| ||||| |||||| ||||||||||||||| |||||||||    
T  7133209 aaatatagaatatttgattttgatccttgatattttgttttaatcattgtaaaat 7133263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 20061822 - 20061940
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  20061822 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttgattttggtccttggtattttgttt 20061921  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  20061922 tactccttgtaaaattgat 20061940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 28032006 - 28031888
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||         ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  28032006 aaatatctgacattttggttttagtccctgtaaaaatatttttttagttttagtccctgcaaatataaaaattttggttttggtccttggtattttgttt 28031907  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  28031906 tagtccttgtaaaattgat 28031888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 50096157 - 50096271
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  50096157 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttt 50096256  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  50096257 taatccttgtaaaat 50096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 390 - 502
Target Start/End: Original strand, 39027495 - 39027607
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||||||||| |||||||    
T  39027495 tagtccccggaaatatctgacattttgcttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttgatccttgg 39027594  T
Q  490 tattttgttttaa 502  Q
    |||||||||||||    
T  39027595 tattttgttttaa 39027607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 50625123 - 50625007
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| |||||||||         |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  50625123 aaatatctgacattttggttttagtccctgtaaaaa--aaaatttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 50625026  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||| ||||||||||||    
T  50625025 tagtccctgtaaaattgat 50625007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 37172272 - 37172390
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||| ||||||| |||||||| ||||||||||        | |||| |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  37172272 aaatatctgtcattttggttttagtccctgtaaaaatatatttttgattttagtcccttcaaatataaaaaatttgattttgatccttggtattttgttt 37172371  T
Q  500 taatccttgtaaaattgat 518  Q
    |||||||||||||||||||    
T  37172372 taatccttgtaaaattgat 37172390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 43191680 - 43191798
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||  |||||||| ||||||||||        |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  43191680 aaatatctgatattttagttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaaattggttttggtccttggtattttgttt 43191779  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  43191780 tagtccttgtaaaattgat 43191798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 33916 - 33798
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        ||||||  || ||| |||||||||||||||||||||| ||||||||||||| |||    
T  33916 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttattctctgtaaatataaaaaatttggttttggtccttggtattttattt 33817  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  33816 tagtccttgtaaaattgat 33798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 10914128 - 10914015
Alignment:
Q  405 tctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatc 504  Q
    |||||||||||| ||||||||  |||||||||        |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| | ||    
T  10914128 tctgacattttggttttagtccgtgtaaaaatatttttttggttttagtccctgcaaatataacaaatttggttttggtccttggtattttgtttcagtc 10914029  T
Q  505 cttgtaaaattgat 518  Q
    ||||||||||||||    
T  10914028 cttgtaaaattgat 10914015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 42155118 - 42154991
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    |||||||  |||||||||||||||||| ||||||   ||||||||||        |||||| |||||||||||||||||||||||||||||| ||||||     
T  42155118 tagtccctgtaaatatctgacattttggttttagatcctgtaaaaat-attttttggttttagtccctgcaaatataaaaaatttggttttggtccttga 42155020  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||| ||||| ||||||||||    
T  42155019 tattttgttttagtccttataaaattgat 42154991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 33581 - 33695
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||| ||||| |||||||| || |||||||         ||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  33581 aaatatctgacgttttggttttagtccctataaaaatatttttctagttttagtctctgcaaatataaaatatttggttttggtccttggtattttgttt 33680  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  33681 taatccttgtaaaat 33695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 20062112 - 20062043
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  20062112 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 20062043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 26244573 - 26244687
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        || ||| ||||||||||||||| || ||||| ||||| |||||||||||| ||||    
T  26244573 aaatatctgacattttggttttagtccctgtaaaaatatttttttggatttagtccctgcaaatatagaatatttgattttggtccttggtatttagttt 26244672  T
Q  500 taatccttgtaaaat 514  Q
    |||||||||||||||    
T  26244673 taatccttgtaaaat 26244687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 26244908 - 26244790
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||| || ||| ||||||        | |||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26244908 aaatatctgacattttggttttaatccctgaaaaaatatttttttgattttagtccctgcaaatatagaaaatttggttttgatccttggtattttgttt 26244809  T
Q  500 taatccttgtaaaattgat 518  Q
    || || |||||||||||||    
T  26244808 tagtcattgtaaaattgat 26244790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 50096447 - 50096374
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  50096447 ggttttagtccctacaaatatagaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 50096374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 50624835 - 50624904
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  50624835 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 50624904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 14602080 - 14602148
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  14602080 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaat 14602148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 14602323 - 14602251
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  14602323 gttttagtccctgcaaatataaaaaaattggttttggtccttgttattttgttttagtccttgtaaaattgat 14602251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 47829275 - 47829203
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  47829275 gttttagtccctgcaaatataaaaaaattggttttggtccttgatattttgttttagtccttgtaaaattgat 47829203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 28031716 - 28031785
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||    
T  28031716 ggttttagtccctgcaaatatataatatttggttttggtccttgatattttgttttaatccttgtaaaat 28031785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 42154819 - 42154888
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||    
T  42154819 ggttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaat 42154888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 47829032 - 47829100
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||    
T  47829032 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttcttttaatccttgtaaaat 47829100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 12322404 - 12322333
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| ||||||||||||  |||||||||||||||| |||||| |||||||||||| ||||||||||||||||    
T  12322404 ttttagtccctgcaaattaaaaaaatttggttttggtccttgatattttgttttagtccttgtaaaattgat 12322333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 39288176 - 39288292
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnngg-ttttcgtccctgcaaatataaaaaattt-ggttttgctccttggtattttgt 497  Q
    |||||| ||||||||||||||||||| ||||||||||         | |||| ||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  39288176 aaatatatgacattttgattttagtctctgtaaaaatattttttttgattttagtcactgcaaatataaaaaattttggttttggtccttggtattttgt 39288275  T
Q  498 tttaatccttgtaaaat 514  Q
    |||| ||||||||||||    
T  39288276 tttagtccttgtaaaat 39288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 514
Target Start/End: Complemental strand, 37172608 - 37172493
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||| | |||||||||||||| || |||||||        |||||| |||||||| |||||| || ||||||||||| || |||||||||||||    
T  37172608 taaatatctggcgttttgattttagtccctataaaaatatttttttggttttagtccctgcgaatatagaatatttggttttggtctttggtattttgtt 37172509  T
Q  499 ttaatccttgtaaaat 514  Q
    |||||| |||||||||    
T  37172508 ttaatcattgtaaaat 37172493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 10913843 - 10913912
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||||||||||||    
T  10913843 ggttttagtccctgcaaatatagaatatttggttttggtcattgatattttgttttaatccttgtaaaat 10913912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 33619210 - 33619141
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  33619210 ggttttagtccctacaaatatagaatatttggttttggtcctttgtattttgttttaatccttgtaaaat 33619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 43191970 - 43191901
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| || |||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||    
T  43191970 ggttttagttcctgcaaatatagaatatttggttttggtccttggtattttgttttgatccttgtaaaat 43191901  T

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Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 514
Target Start/End: Original strand, 12322115 - 12322230
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||||| ||||| |||||||| || |||||||        ||| || |||||| |||||||| || ||||||||||| |||| ||||| |||||    
T  12322115 taaatatctgacgttttggttttagtccctataaaaatatttttttggtattagtccctacaaatatagaatatttggttttggtcctaggtatattgtt 12322214  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||||||||||    
T  12322215 ttaatccttgtaaaat 12322230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 18963678 - 18963747
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| || ||| |||||||||||||||||||||||||    
T  18963678 ggttttagtccttgcaaatatagaatatttggttttggtcattgttattttgttttaatccttgtaaaat 18963747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 33618976 - 33619038
Alignment:
Q  456 ctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||| ||||||||||| || |||||||||||||||  || |||||||||||||    
T  33618976 ctgcaaatataaaatatttggttttggtcgttggtattttgttttcgtctttgtaaaattgat 33619038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 51999559 - 51999613
Alignment:
Q  460 aaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||||||||||||||  |||||| |||||||||||| ||||||||||||    
T  51999559 aaatataaaaaatttggttttaatccttgatattttgttttagtccttgtaaaat 51999613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 39288467 - 39288399
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| |||| | |||||| | || ||||||||||| |||||||||||||||||||||| |||||||||    
T  39288467 gttttagtccattcaaataaagaatatttggttttggtccttggtattttgttttaatctttgtaaaat 39288399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 13154598 - 13154480
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||||||||| || ||||||||||        |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  13154598 aaatatctgacattttgattttaatccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaaattggttttggtccttggtattttgttt 13154499  T
Q  500 taatccttgtaaaattgat 518  Q
    |  ||||||||||||||||    
T  13154498 ttgtccttgtaaaattgat 13154480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 3273079 - 3272961
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| || |||||||        | |||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  3273079 aaatatctgacattttggttttagtccctataaaaatatttttttgattttagtccctgcaaatataaaaaacttggttttggtccttggtattttgttt 3272980  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  3272979 tagtccttgtaaaattgat 3272961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 9180404 - 9180286
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||| || ||||||||||        |||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  9180404 aaatatctgacattttggttttaatccctgtaaaaatattgttttggttttagtccttgcaaatataaaaaatttggttttggtccttgatattttgttt 9180305  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  9180304 tagtccttgtaaaattgat 9180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 13405807 - 13405689
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| ||||| || ||||||||||        |||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13405807 aaatatttgacattttggttttaatccctgtaaaaatatttttttggttttagtcccttcaaatataaaaaatttggttttggtccttggtattttgttt 13405708  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  13405707 tattccttgtaaaattgat 13405689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 515
Target Start/End: Complemental strand, 31685985 - 31685915
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  31685985 ggttttagtccctgcaaatataaaaaatttggttttggtccttagtattttgttttagtccttgtaaaatt 31685915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 390 - 511
Target Start/End: Complemental strand, 2835462 - 2835342
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  ||||||||||||||||| |||||||| ||||||||||        | |||| |||||||||||||||||||||| ||||||| | |||||    
T  2835462 tagtccccgcaaatatctgacattttggttttagtcgctgtaaaaatatttttttgattttagtccctgcaaatataaaaaatt-ggttttggttcttgg 2835364  T
Q  490 tattttgttttaatccttgtaa 511  Q
    |||||||||||| |||||||||    
T  2835363 tattttgttttagtccttgtaa 2835342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 18764598 - 18764530
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  18764598 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 18764530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 24332574 - 24332503
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  24332574 gttttagtccctgcaa-tataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 24332503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 6891849 - 6891916
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  6891849 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 6891916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 6943728 - 6943795
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  6943728 ttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 6943795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 220581 - 220650
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  220581 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttataaaat 220650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 689736 - 689805
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  689736 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttataaaat 689805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 734204 - 734273
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  734204 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttataaaat 734273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 858100 - 858169
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  858100 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttataaaat 858169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 6944016 - 6943898
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||  ||||||||||        |||||| |||||||||||||| ||||||||| ||||| | |||| |||||| |||    
T  6944016 aaatatctgacattttggttttagttcctgtaaaaatatttttttggttttagtccctgcaaatatgaaaaatttgattttggttcttgatattttattt 6943917  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  6943916 tagtccttgtaaaattgat 6943898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 13154308 - 13154377
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||    
T  13154308 ggttttagtccctgcaaatatagaatatttgattttggtccttggtattttgttttaatccttgtaaaat 13154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 18764309 - 18764427
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| ||||||||  |||||||||        |||||  |||||| |||||||||||| |||||||||| || ||||||||||||||    
T  18764309 aaatatctgacattttggttttagtccttgtaaaaatatttttttggtttgagtcccttcaaatataaaaactttggttttggtctttggtattttgttt 18764408  T
Q  500 taatccttgtaaaattgat 518  Q
    |  ||||||||||||||||    
T  18764409 ttgtccttgtaaaattgat 18764427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 24332331 - 24332400
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||    
T  24332331 ggttttagtccctgcaaatatagaatatttggtttgggtccttggtattttgttttaatccttgtaaaat 24332400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 26479608 - 26479539
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  26479608 ggttttagtccctgcaaatatagaatatttggttttggtccttagtattttgttttaatccttgtaaaat 26479539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 31186687 - 31186614
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  31186687 ggttttagtccctgtaaatctaaaaaatttggttttggtccttggtattttgttgtagtccttgtaaaattgat 31186614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 31685739 - 31685808
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  31685739 ggttttagtccatgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 31685808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 31403227 - 31403158
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||    
T  31403227 ggttttagtcccttcaaatatagaatatttggttttggtcctttgtattttgttttaatccttgtaaaat 31403158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 26479394 - 26479460
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaa 511  Q
    |||||| ||| ||||||||||||||| |||||||||| || |||||||||||||||| |||||||||    
T  26479394 ggttttagtcactgcaaatataaaaattttggttttggtcattggtattttgttttagtccttgtaa 26479460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 2835194 - 2835263
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| ||| |||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||    
T  2835194 ggttttagtctctgtaaatataaaatatttggttttggtcctcggtattttgttttaatcattgtaaaat 2835263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 9180114 - 9180183
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||| |||||||||| || |||||||| || |||||||| |||||||||||||||||||||||    
T  9180114 ggttttagtccatgcaaatatagaatatttggttgtggtccttggttttttgttttaatccttgtaaaat 9180183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 31402982 - 31403055
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||||||||||||||| ||||||||||| || |||||| ||||||||  || |||||||||||||    
T  31402982 ggttttagtccctgcaaatataaaatatttggttttggtcgttggtaatttgttttcgtctttgtaaaattgat 31403055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 31186445 - 31186511
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||||||| || ||||||||||| || |||||||||||||||||| ||||||||||    
T  31186445 ttttagtccctgcaaatatagaatatttggttttggtcattggtattttgttttaat-cttgtaaaat 31186511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 472 - 514
Target Start/End: Original strand, 3272816 - 3272858
Alignment:
Q  472 tttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  3272816 tttggttttggtccttggtattttgttttaatccttgtaaaat 3272858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 515
Target Start/End: Original strand, 37586110 - 37586157
Alignment:
Q  468 aaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  37586110 aaaatttagttttggtccttggtattttgttttagtccttgtaaaatt 37586157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 37586305 - 37586262
Alignment:
Q  471 atttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  37586305 atttggttttggtccttggtattttgttttaatcctggtaaaat 37586262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 6892065 - 6892019
Alignment:
Q  472 tttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||||    
T  6892065 tttggttttggtccttggtgttttgttttagtccttgtaaaattgat 6892019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 13405517 - 13405586
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| | ||||| ||||||| || |||| |||||| || ||||||||||||||||||| |||||||||    
T  13405517 ggttttagaccctgtaaatatagaatattttgttttggtctttggtattttgttttaatcattgtaaaat 13405586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 20112715 - 20112660
Alignment:
Q  460 aaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||||||||||||| ||||  |||||| |||||||||||| ||||| |||||||    
T  20112715 aaatataaaaaatttgattttaatccttgatattttgttttagtccttctaaaatt 20112660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 40729422 - 40729304
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  40729422 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaattgggttttggtccttggtgttttgttt 40729323  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  40729322 tagtccttgtaaaattgat 40729304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 42517226 - 42517108
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||||| ||||  |||||||||||||||||    
T  42517226 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttgattttagtccttggtattttgttt 42517127  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  42517126 tagtccttgtaaaattgat 42517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 24380 - 24498
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||        |||||| |||||||||||||||||||||| |||||||  |||| |||||||||||    
T  24380 aaatatctgacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaattgggttttggacctttgtattttgttt 24479  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  24480 tattccttgtaaaattgat 24498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 19158052 - 19157934
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||         ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  19158052 aaatatctgacattttggttttagtccctgtaaaaatatttttttagttttagtccctgcaaatataaaaattttggttttggtccttggtattttgttt 19157953  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||| ||||||||||||    
T  19157952 tagtccctgtaaaattgat 19157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 20757451 - 20757333
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| ||||||||||         ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  20757451 aaatatctgacattttggttttagtccctgtaaaaatatttttttagttttagtccctgcaaatataaaaattttggttttggtccttggtattttgttt 20757352  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||| ||||||||||||    
T  20757351 tagtccctgtaaaattgat 20757333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 44219318 - 44219436
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||||||||||||||        | |||| ||||||  |||||||||||||||||||||| ||||| |||||||||||    
T  44219318 aaatatctgacattttggttttagtcactgtaaaaatatttttttgtttttagtccctataaatataaaaaatttggttttggtcctttgtattttgttt 44219417  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  44219418 tagtccttgtaaaattgat 44219436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 44483595 - 44483467
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  |||||| | |||||||| |||||||| ||||||||||        |||||| ||||||||||||||||||| |||||||||| || ||||    
T  44483595 tagtccccgcaaatatttaacattttggttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaattttggttttggtcattgg 44483496  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||| ||||||||||||||||    
T  44483495 tattttgttttagtccttgtaaaattgat 44483467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 829988 - 829922
Alignment:
Q  452 gtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  829988 gtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 829922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 1195168 - 1195102
Alignment:
Q  452 gtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  1195168 gtccctgcaaatataaaaaatttggttttggtccttggtattttgttttagtccttgtaaaattgat 1195102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 19476707 - 19476635
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19476707 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaattgat 19476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 34595332 - 34595461
Alignment:
Q  390 tagtccccttaaatatctgaca-ttttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttg 488  Q
    |||||||| ||||||||||||| ||||| ||||| || ||||||||||        | |||| ||||||||||||  |||||||||||||||| ||||||    
T  34595332 tagtccccgtaaatatctgacaattttggttttaatccctgtaaaaatatttttttgattttagtccctgcaaattaaaaaaatttggttttggtccttg 34595431  T
Q  489 gtattttgttttaatccttgtaaaattgat 518  Q
    ||||||||||||| ||||||||||||||||    
T  34595432 gtattttgttttagtccttgtaaaattgat 34595461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 13426606 - 13426537
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  13426606 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 13426537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 19157762 - 19157831
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  19157762 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 19157831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 20757161 - 20757230
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  20757161 ggttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 20757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 22364965 - 22364896
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  22364965 ggttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaat 22364896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 40729133 - 40729201
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  40729133 gttttagtccctgcaaatatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 40729201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 34487454 - 34487383
Alignment:
Q  447 ttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  34487454 ttttagtccctccaaatataaaaaatttggtttcggtccttggtattttgttttagtccttgtaaaattgat 34487383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 514
Target Start/End: Complemental strand, 34595679 - 34595564
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||||||| ||||| |||||||| || |||||||        || ||| ||||||||||||||| || ||||||||||| |||||||||| |||||    
T  34595679 taaatatctgacgttttggttttagtccctataaaaatatttttttggctttagtccctgcaaatatagaatatttggttttggtccttggtatattgtt 34595580  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||||||||||    
T  34595579 ttaatccttgtaaaat 34595564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 24670 - 24601
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  24670 ggttttagtccctgcaaaaatagaatatttggttttggtccttggtattttgttttaatccttgtaaaat 24601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 31579500 - 31579573
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  31579500 ggttttagtccctgcaaatataaaaaaattgattttggtccttggtattttgtttttgtccttgtaaaattgat 31579573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 31579745 - 31579676
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| |||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  31579745 ggttttagtccctgcaaatataaaatatttgattttggtctttggtattttgttttaatccttgtaaaat 31579676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 42516936 - 42517005
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||    
T  42516936 ggttttagtccctgcaaatatagaatatttagttttggtccttggtattttgttttaatccttgtaaaat 42517005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 22954410 - 22954482
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    ||||| |||||||||||||||||||| |||||| || |||||| |||||||||||| ||||||||||||||||    
T  22954410 gttttagtccctgcaaatataaaaaaattggttgtggtccttgatattttgttttagtccttgtaaaattgat 22954482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 22364723 - 22364795
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |||||||||    
T  22364723 ggttttagtccctgcaaatataaaaaatttgg-tttggtccttgatattttgttttagtccttgcaaaattgat 22364795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 22954645 - 22954576
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||    
T  22954645 ggttttagtccctgcaaatatagaatatttgattttggtctttggtattttgttttaatccttgtaaaat 22954576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 35026758 - 35026685
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||| ||| |||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  35026758 ggttttagtctctgtaaatataaaaaaattggttttggtccttgatattttgttttagtccttgtaaaattgat 35026685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 44219608 - 44219539
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||| ||| || |||||||||||  |||||||||||||||||||||||||||||||    
T  44219608 ggttttagtccctgcaaaaatagaatatttggttttggcccttggtattttgttttaatccttgtaaaat 44219539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 35026514 - 35026582
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| |||| |||||||||| || ||||||||||| || |||||||||||||||||||||||||||||    
T  35026514 gttttagtccatgcaaatatagaatatttggttttgatcattggtattttgttttaatccttgtaaaat 35026582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 44483307 - 44483368
Alignment:
Q  453 tccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||||||||||| || ||||||||||  |||||| |||||||||||||||||||||||||    
T  44483307 tccctgcaaatatagaatatttggttttagtccttgatattttgttttaatccttgtaaaat 44483368  T

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Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 514
Target Start/End: Original strand, 34487211 - 34487280
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||| ||||||||||| || ||||||||||  || ||||||||||||||||||| |||||||||    
T  34487211 ggttttagtctctgcaaatatagaatatttggtttttgtctttggtattttgttttaatcgttgtaaaat 34487280  T

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Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 19476465 - 19476532
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| | ||||||||||  ||||||| ||||||||||    
T  19476465 gttttagtccctgcaaatatagaatatttggttttggttcttggtatttaattttaat-cttgtaaaat 19476532  T

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Target: scaffold0170 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 8565 - 8684
Alignment:
Q  400 aaatatctgacattttgatttt-agtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    |||||||| |||||||| |||| |||| ||||||||||        |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  8565 aaatatctaacattttggtttttagtccctgtaaaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgtt 8664  T
Q  499 ttaatccttgtaaaattgat 518  Q
    ||| ||||||||||||||||    
T  8665 ttagtccttgtaaaattgat 8684  T

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Target: scaffold0170; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 8855 - 8787
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||    
T  8855 gttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatctttgtaaaat 8787  T

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Target: scaffold0137 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 36791 - 36907
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    ||||||||||||||||| |||||||| |||  |||||        |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  36791 aaatatctgacattttggttttagtccctg--aaaatatttttttggttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 36888  T
Q  500 taatccttgtaaaattgat 518  Q
    || ||||||||||||||||    
T  36889 tagtccttgtaaaattgat 36907  T

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Target: scaffold0137; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 515
Target Start/End: Complemental strand, 37052 - 37009
Alignment:
Q  472 tttggttttgctccttggtattttgttttaatccttgtaaaatt 515  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  37052 tttggttttggtccttggtattttgttttaatccttgtaaaatt 37009  T

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Target: scaffold0103 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 43301 - 43419
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||| |||||||||| |||||||| ||||||||||         ||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  43301 aaatatttgacattttggttttagtccctgtaaaaatatattttttgttttagtccctgcaaatataaaaaatttggttttggtccttggtattttgttt 43400  T
Q  500 taatccttgtaaaattgat 518  Q
    || | ||||||||||||||    
T  43401 tagtacttgtaaaattgat 43419  T

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Target: scaffold0103; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 43592 - 43523
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  43592 ggttttagtccctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaat 43523  T

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Target: scaffold0021 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 118391 - 118274
Alignment:
Q  400 aaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttt 499  Q
    |||||||||| |||||| |||| ||| ||||||||||        |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  118391 aaatatctgatattttggttttcgtccctgtaaaaatatttttttggttttagtcactgcaaatataaaaaatttggttttggtccttggtattttgttt 118292  T
Q  500 taatccttgtaaaattga 517  Q
    || |||||||||||||||    
T  118291 tagtccttgtaaaattga 118274  T

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Target: scaffold0021; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 118098 - 118159
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatcct 506  Q
    |||||| ||||||||||||||| || ||||  ||||| ||||| ||||||||||||||||||    
T  118098 ggttttagtccctgcaaatatagaatatttaattttgatcctttgtattttgttttaatcct 118159  T

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Target: scaffold0028 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 74228 - 74155
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  74228 ggttttagtccctgcaaatataaaaaatttggctttggtccttggtattttgttttagtccttgtaaaattgat 74155  T

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Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 74005 - 74053
Alignment:
Q  466 aaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||| ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  74005 aaaatatttggttttggtccttcgtattttgttttaatccttataaaat 74053  T

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Target: scaffold0006 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 212426 - 212554
Alignment:
Q  390 tagtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttgg 489  Q
    ||||||||  ||||||| ||||||||| |||||||| ||||||||||        |||||  ||||||||||||  ||||| |||||||||| |||||||    
T  212426 tagtccccgcaaatatcagacattttggttttagtccctgtaaaaatatttttttggtttaagtccctgcaaattaaaaaattttggttttggtccttgg 212525  T
Q  490 tattttgttttaatccttgtaaaattgat 518  Q
    |||||||||||| ||||||||||||||||    
T  212526 tattttgttttagtccttgtaaaattgat 212554  T

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Target: scaffold0006; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 212779 - 212657
Alignment:
Q  392 gtccccttaaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggta 491  Q
    |||||| |||||||||||  ||||| |||||||| || |||||||        |||||| ||||||||||||||| || ||||||||||| || || |||    
T  212779 gtccccgtaaatatctgatgttttggttttagtccctataaaaatatttttttggttttagtccctgcaaatatagaatatttggttttggtctttcgta 212680  T
Q  492 ttttgttttaatccttgtaaaat 514  Q
    |||||||||||||||||||||||    
T  212679 ttttgttttaatccttgtaaaat 212657  T

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Target: scaffold0167 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 4701 - 4632
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  4701 ggttttagtccctgcaaatatataatatttggttttggtccttggtattttgttttaatccttgtaaaat 4632  T

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Target: scaffold0126 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 36307 - 36239
Alignment:
Q  446 gttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaat 514  Q
    ||||| || |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  36307 gttttagttcctgcaaatatagaatatttggttttgatccttggtattttgttttaatccttgtaaaat 36239  T

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Target: scaffold0126; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 36063 - 36136
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| |||| ||||||||||||||||||| ||||| || ||| |||||||||||| ||||||||||||||||    
T  36063 ggttttagtccttgcaaatataaaaaatttgattttggtctttgatattttgttttagtccttgtaaaattgat 36136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 514
Target Start/End: Original strand, 25146 - 25261
Alignment:
Q  399 taaatatctgacattttgattttagtcactgtaaaaatgnnnnnnnggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgtt 498  Q
    ||||||| |||| ||||| |||||||| || |||||||        |||||| ||||||| ||||||| || ||||||||||| ||||| ||||||||||    
T  25146 taaatatttgacgttttggttttagtccctataaaaatatttttttggttttagtccctgtaaatatagaatatttggttttggtccttcgtattttgtt 25245  T
Q  499 ttaatccttgtaaaat 514  Q
    ||||||||||||||||    
T  25246 ttaatccttgtaaaat 25261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 25425 - 25352
Alignment:
Q  445 ggttttcgtccctgcaaatataaaaaatttggttttgctccttggtattttgttttaatccttgtaaaattgat 518  Q
    |||||| ||||||||||||  ||||  |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  25425 ggttttagtccctgcaaattaaaaatttttggttttggtccttggtattttattttagtccttgtaaaattgat 25352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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