View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6952_high_6 (Length: 318)
Name: NF6952_high_6
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6952_high_6 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0481 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 1479086 - 1479391
Alignment:
| Q |
13 |
tgagatgaaactatagctatccaattgttaccactaataatagttaacaggatcgaaaaaggtaggttgggtagtaaagaaacaacattgcaatgatttg |
112 |
Q |
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| T |
1479086 |
tgagatgaaactatagctatccaattgttaccactaataatagttaacaggatcgagaaaggtaggttgggtagtaaagaaacaacattgcaatgatttg |
1479185 |
T |
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| Q |
113 |
ttagcaaccaaataaacaatgctttcatgatttaatctgataaggtaatttgttgtatctaatgtccatttcaaatattacaattaacccagcaagcatg |
212 |
Q |
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| T |
1479186 |
ttagcaaccaaataaacaatgctttcatgatttaatctgataaggtaatttgttgtatctaatgtccctttcaaatattacaattaacccagcaagcatg |
1479285 |
T |
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| Q |
213 |
tagcttcctacagatgtaatgacatacataaaagaaggccaggtctatggtgcacaagagatgtaagtcttgcatcatgcacaaattacacaatgttatt |
312 |
Q |
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| T |
1479286 |
tagcttcctacagatgtaatgacatacataaaagaaggccaagtctatggtgcacaagagatgtaagtcttgcatcatgcacaaattgcacaatgttatt |
1479385 |
T |
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| Q |
313 |
ttcacc |
318 |
Q |
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| T |
1479386 |
ttcacc |
1479391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 3204 - 3153
Alignment:
| Q |
156 |
ggtaatttgttgtatctaatgtccatttcaaatattacaattaacccagcaa |
207 |
Q |
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| T |
3204 |
ggtaatatgttgtatctaatgtccatttcaaatattacaattaacccagcaa |
3153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 3655 - 3611
Alignment:
| Q |
13 |
tgagatgaaactatagctatccaattgttaccactaataatagtt |
57 |
Q |
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| T |
3655 |
tgagatgaagctatagctatctagttgttaccgctaataatagtt |
3611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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