View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6952_high_7 (Length: 291)

Name: NF6952_high_7
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6952_high_7
NF6952_high_7
[»] chr7 (38 HSPs)
chr7 (18-99)||(43202447-43202528)
chr7 (46-174)||(32942090-32942218)
chr7 (38-105)||(46147228-46147295)
chr7 (46-104)||(35820098-35820156)
chr7 (21-105)||(23729400-23729485)
chr7 (21-105)||(26524926-26525011)
chr7 (52-104)||(20334597-20334649)
chr7 (44-104)||(34751001-34751061)
chr7 (21-100)||(37375341-37375421)
chr7 (46-105)||(48642792-48642851)
chr7 (24-93)||(10338799-10338869)
chr7 (46-104)||(11834510-11834568)
chr7 (46-100)||(23032691-23032745)
chr7 (32-105)||(13852321-13852394)
chr7 (37-103)||(20306629-20306691)
chr7 (69-104)||(31287813-31287848)
chr7 (46-101)||(40848867-40848922)
chr7 (51-105)||(8118296-8118350)
chr7 (51-105)||(29628120-29628174)
chr7 (21-104)||(8568534-8568623)
chr7 (51-100)||(21237792-21237841)
chr7 (32-105)||(27054734-27054802)
chr7 (46-105)||(3213233-3213292)
chr7 (46-97)||(7697304-7697355)
chr7 (34-100)||(32237665-32237732)
chr7 (46-97)||(47646731-47646782)
chr7 (50-100)||(2308130-2308180)
chr7 (71-105)||(8768999-8769033)
chr7 (71-105)||(10671833-10671867)
chr7 (71-105)||(11206394-11206428)
chr7 (51-105)||(16535759-16535813)
chr7 (51-105)||(16629849-16629903)
chr7 (71-105)||(47069681-47069715)
chr7 (71-105)||(47204493-47204527)
chr7 (71-105)||(47903260-47903294)
chr7 (51-104)||(524882-524935)
chr7 (46-99)||(29211660-29211713)
chr7 (69-105)||(27456372-27456408)
[»] chr3 (33 HSPs)
chr3 (32-157)||(55467639-55467764)
chr3 (46-104)||(54122034-54122092)
chr3 (50-100)||(2832409-2832459)
chr3 (50-99)||(10481660-10481709)
chr3 (21-99)||(37045328-37045406)
chr3 (46-104)||(17144741-17144799)
chr3 (36-98)||(45699636-45699698)
chr3 (36-98)||(50579004-50579065)
chr3 (50-103)||(26291971-26292024)
chr3 (32-105)||(35402202-35402275)
chr3 (50-172)||(42363240-42363362)
chr3 (21-100)||(2566315-2566395)
chr3 (49-101)||(26758240-26758292)
chr3 (32-104)||(51191718-51191790)
chr3 (46-105)||(44650976-44651035)
chr3 (51-102)||(52632054-52632105)
chr3 (180-226)||(8913940-8913986)
chr3 (64-105)||(20846484-20846525)
chr3 (36-105)||(40483935-40483999)
chr3 (71-104)||(45915239-45915272)
chr3 (45-105)||(38680818-38680878)
chr3 (46-105)||(4669658-4669717)
chr3 (30-105)||(6004387-6004457)
chr3 (45-96)||(25465821-25465872)
chr3 (69-104)||(38652023-38652058)
chr3 (32-98)||(27054094-27054160)
chr3 (71-105)||(51149693-51149727)
chr3 (66-100)||(55129746-55129780)
chr3 (46-103)||(8557969-8558026)
chr3 (33-98)||(45629212-45629277)
chr3 (69-101)||(4280296-4280328)
chr3 (71-103)||(33360968-33361000)
chr3 (50-98)||(48167280-48167327)
[»] chr2 (20 HSPs)
chr2 (21-104)||(41461095-41461179)
chr2 (32-105)||(17762754-17762827)
chr2 (36-105)||(27301485-27301554)
chr2 (51-174)||(12041605-12041728)
chr2 (51-105)||(44085502-44085556)
chr2 (50-104)||(5862646-5862700)
chr2 (22-99)||(13193917-13193995)
chr2 (36-105)||(28790518-28790587)
chr2 (36-97)||(1331030-1331086)
chr2 (46-105)||(30759659-30759718)
chr2 (21-101)||(36500622-36500703)
chr2 (18-100)||(11678014-11678095)
chr2 (18-100)||(11695492-11695573)
chr2 (50-93)||(21480827-21480870)
chr2 (71-105)||(9811403-9811437)
chr2 (71-105)||(17916887-17916921)
chr2 (71-105)||(36413676-36413710)
chr2 (71-105)||(44035319-44035353)
chr2 (71-105)||(44979805-44979839)
chr2 (46-95)||(12841563-12841612)
[»] chr8 (23 HSPs)
chr8 (46-105)||(44336785-44336844)
chr8 (21-105)||(40436449-40436534)
chr8 (21-95)||(9012822-9012897)
chr8 (46-104)||(4785249-4785307)
chr8 (46-104)||(36340771-36340829)
chr8 (46-104)||(11218963-11219021)
chr8 (18-95)||(19539400-19539478)
chr8 (46-104)||(33565970-33566028)
chr8 (32-105)||(7428435-7428503)
chr8 (32-101)||(45366324-45366393)
chr8 (46-100)||(6591245-6591299)
chr8 (60-104)||(22811198-22811242)
chr8 (37-105)||(35688407-35688475)
chr8 (71-105)||(3006608-3006642)
chr8 (71-105)||(5803282-5803316)
chr8 (46-100)||(6616940-6616994)
chr8 (71-105)||(10661166-10661200)
chr8 (46-104)||(24682102-24682159)
chr8 (46-100)||(31497610-31497664)
chr8 (20-92)||(13325324-13325397)
chr8 (50-98)||(6649539-6649587)
chr8 (46-102)||(15272317-15272373)
chr8 (46-102)||(15452686-15452742)
[»] chr4 (35 HSPs)
chr4 (21-104)||(18396342-18396426)
chr4 (40-105)||(5122389-5122454)
chr4 (37-98)||(36106421-36106482)
chr4 (46-104)||(20986435-20986493)
chr4 (46-104)||(23625912-23625970)
chr4 (52-105)||(14866789-14866842)
chr4 (33-102)||(28147795-28147864)
chr4 (32-105)||(48338353-48338426)
chr4 (21-103)||(48602509-48602587)
chr4 (176-222)||(12842368-12842414)
chr4 (46-104)||(19753532-19753590)
chr4 (46-104)||(19786216-19786274)
chr4 (51-105)||(48293421-48293475)
chr4 (21-104)||(8311898-8311982)
chr4 (32-104)||(23449986-23450053)
chr4 (46-105)||(32223330-32223389)
chr4 (37-84)||(42198817-42198864)
chr4 (32-105)||(54274017-54274087)
chr4 (32-105)||(42557737-42557815)
chr4 (46-99)||(18536655-18536708)
chr4 (46-95)||(29335130-29335179)
chr4 (32-105)||(40806815-40806888)
chr4 (32-104)||(4688690-4688762)
chr4 (51-103)||(29232767-29232819)
chr4 (46-105)||(29636786-29636845)
chr4 (71-105)||(29644161-29644195)
chr4 (71-105)||(30194011-30194045)
chr4 (71-105)||(50570994-50571028)
chr4 (71-104)||(23937554-23937587)
chr4 (71-104)||(36077586-36077619)
chr4 (176-224)||(2933642-2933690)
chr4 (21-84)||(18319551-18319615)
chr4 (21-84)||(18399066-18399130)
chr4 (21-100)||(40494440-40494520)
chr4 (69-105)||(45983396-45983432)
[»] chr5 (27 HSPs)
chr5 (37-96)||(6633341-6633400)
chr5 (46-105)||(27572056-27572115)
chr5 (46-104)||(17132101-17132159)
chr5 (46-100)||(41454881-41454935)
chr5 (21-105)||(14652465-14652550)
chr5 (21-104)||(36567735-36567814)
chr5 (50-105)||(40692507-40692561)
chr5 (46-104)||(35240835-35240893)
chr5 (44-104)||(32244385-32244445)
chr5 (32-95)||(563901-563964)
chr5 (46-105)||(22747584-22747643)
chr5 (32-98)||(20191976-20192042)
chr5 (51-100)||(2422824-2422873)
chr5 (55-100)||(40331510-40331555)
chr5 (69-105)||(2588987-2589023)
chr5 (21-84)||(18845545-18845609)
chr5 (46-93)||(26007388-26007435)
chr5 (51-102)||(35726981-35727032)
chr5 (47-105)||(1048725-1048783)
chr5 (51-89)||(2797152-2797190)
chr5 (71-105)||(11917418-11917452)
chr5 (71-105)||(27886452-27886486)
chr5 (71-105)||(36177141-36177175)
chr5 (71-104)||(8409004-8409037)
chr5 (46-98)||(6594997-6595049)
chr5 (51-95)||(36760136-36760180)
chr5 (73-105)||(42544671-42544703)
[»] chr6 (19 HSPs)
chr6 (21-105)||(12108549-12108634)
chr6 (50-104)||(19135127-19135181)
chr6 (21-104)||(22413851-22413940)
chr6 (32-93)||(31945426-31945487)
chr6 (51-104)||(9686071-9686124)
chr6 (176-227)||(6266444-6266495)
chr6 (51-105)||(14940588-14940642)
chr6 (72-105)||(30752543-30752576)
chr6 (69-105)||(892375-892411)
chr6 (31-91)||(13092021-13092081)
chr6 (51-103)||(29048141-29048193)
chr6 (70-105)||(6266916-6266951)
chr6 (32-99)||(28610636-28610703)
chr6 (46-105)||(28632947-28633006)
chr6 (45-99)||(4562875-4562929)
chr6 (71-105)||(5874188-5874222)
chr6 (71-105)||(10590863-10590897)
chr6 (71-105)||(12270569-12270603)
chr6 (32-104)||(24644955-24645021)
[»] chr1 (33 HSPs)
chr1 (46-105)||(8165562-8165621)
chr1 (46-105)||(21685553-21685612)
chr1 (19-105)||(32910352-32910439)
chr1 (46-105)||(36203454-36203513)
chr1 (51-100)||(9330404-9330453)
chr1 (21-104)||(12973573-12973662)
chr1 (32-104)||(33769891-33769963)
chr1 (21-104)||(50471240-50471324)
chr1 (32-104)||(52380719-52380791)
chr1 (46-101)||(11074410-11074465)
chr1 (46-105)||(39158334-39158393)
chr1 (34-100)||(16062880-16062946)
chr1 (51-100)||(6248099-6248148)
chr1 (21-104)||(26345038-26345127)
chr1 (52-100)||(50952047-50952095)
chr1 (54-100)||(9250118-9250164)
chr1 (36-105)||(17651764-17651838)
chr1 (46-96)||(24629964-24630014)
chr1 (51-105)||(52828835-52828888)
chr1 (24-102)||(9962135-9962214)
chr1 (46-101)||(17989063-17989118)
chr1 (51-98)||(27507507-27507554)
chr1 (71-105)||(8211291-8211325)
chr1 (51-105)||(16537853-16537907)
chr1 (71-105)||(20493761-20493795)
chr1 (46-96)||(23475123-23475173)
chr1 (71-105)||(32954050-32954084)
chr1 (21-58)||(40095401-40095439)
chr1 (71-105)||(45691810-45691844)
chr1 (31-105)||(47984497-47984570)
chr1 (50-100)||(50153426-50153476)
chr1 (51-104)||(2490044-2490097)
chr1 (51-96)||(10847543-10847588)
[»] scaffold0015 (1 HSPs)
scaffold0015 (46-104)||(62413-62471)
[»] scaffold0204 (2 HSPs)
scaffold0204 (32-105)||(25875-25948)
scaffold0204 (37-105)||(14535-14603)
[»] scaffold0470 (1 HSPs)
scaffold0470 (46-100)||(6258-6312)
[»] scaffold0308 (1 HSPs)
scaffold0308 (71-105)||(5919-5953)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 43202528 - 43202447
Alignment:
Q  18 ccacaccaaccgatcaatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43202528 ccacaccaaccgatcaatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 43202447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 32942090 - 32942218
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatgnnnnnnnatcttacagttcggattacatttagcctcacac 145  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||       ||||| |||||||||| || |||| ||||| |     
T  32942090 ttggtttggtttggttcggattgtattttaaaagtcaaccgaatcaaaccaaaccgcatgtttttttatcttgcagttcggatgacttttaacctcaaaa 32942189  T
Q  146 ctgaaccaaaccacaatgcgaacacccct 174  Q
    | |||||||||  ||  ||||||||||||    
T  32942190 ccgaaccaaactgcaccgcgaacacccct 32942218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 46147295 - 46147228
Alignment:
Q  38 aaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||    
T  46147295 aaaccgcattggtttggtttggttcagattttattttaaaagtcaaccaaaccaaaccaatccgcatg 46147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 35820098 - 35820156
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  35820098 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcat 35820156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 23729485 - 23729400
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| || |||||||  ||| |||||||||| |||||||| |||||||||||||||||||   |||||||||||||||    
T  23729485 caccaaccgatccaaaccaaaccgtattagtttggtttggttcagattttattttaaaagtcaaccgagttaaaccaaaccgcatg 23729400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 26524926 - 26525011
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| || || |||| |||||||| |||||||||  |||| |||||||||||| ||||||||||| ||||||||||||    
T  26524926 caccaaccgatccaaccctaaccgcattggttaggtttgattatgattttattttaaaagttaaccgaaccaacccaaaccgcatg 26525011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 20334649 - 20334597
Alignment:
Q  52 tggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  20334649 tggtttggttcagattttatttttaaagtcaaccgaaccaaaccaaaccgcat 20334597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 34751061 - 34751001
Alignment:
Q  44 cattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||    
T  34751061 cattggtttggtttgattcggattttattttaaaaatcaaccaaaccaaaccaacccgcat 34751001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 37375421 - 37375341
Alignment:
Q  21 caccaaccgat-caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||| ||| ||||||| ||||||||| ||||| ||| |||| |||||| |||||||||| ||||||||||||||    
T  37375421 caccaaccgattcaacccaaaccgcattggtttagtttggttcggattctatttttaaagtcaaccaaaccaaaccaaacc 37375341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 48642851 - 48642792
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||    
T  48642851 ttggtttggtttggttcaaatttaatttttaaagtcaaccgaaccaaaccaaaccgcatg 48642792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 10338799 - 10338869
Alignment:
Q  24 caaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaa 93  Q
    ||||||||| ||||||||||  |||| ||||||||| |||||||| ||||||||||||||| |||||||||    
T  10338799 caaccgatccaatccaaaccgaattgatttggtttggttcagattttattttaaaagtcaatcgaaccaaa 10338869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 11834510 - 11834568
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| ||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  11834510 ttggtttgatttgattcagactgtattttaaaaatcaattgaaccaaaccaaaccgcat 11834568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 23032745 - 23032691
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||    
T  23032745 ttggtttggtttggttcaaattttattttaaaagtcaaccgaaccaaactaaacc 23032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13852394 - 13852321
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| ||||||||||||||| ||  |||    |||||||| ||||||||||||||||||||||||||    
T  13852394 caatccaaaccgcattggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 13852321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 20306691 - 20306629
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||    |||||||||||||||||    
T  20306691 caaaccacattggtttggtttggttcggattttattttaaaagtca----aaccaaaccaaaccgca 20306629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 31287813 - 31287848
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||||||||||||||||||||||||||    
T  31287813 tattttaaaagtcaaccgaaccaaaccaaaccgcat 31287848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 40848922 - 40848867
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    |||||||  |||| ||| |||| |||||||||||||||||||||||||||||||||    
T  40848922 ttggttttatttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccg 40848867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 8118296 - 8118350
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| |||||||| |||||| ||| ||||||||||||||||||||| ||||    
T  8118296 ttggtttggttcagattttatttttaaaatcaaccgaaccaaaccaaaccacatg 8118350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 29628174 - 29628120
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||| |||||||||| ||| |||||||||| |||||||||||    
T  29628174 ttggtttgattcaaattttattttaaaattcagccgaaccaaatcaaaccgcatg 29628120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 8568534 - 8568623
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcag-----attgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| |||||||||| |||| ||||| ||| ||| ||     ||| |||||||||||||||||||||| |||||||||||||    
T  8568534 caccaaccgatccaatccaaaccgcattagtttgatttcatttagttcggattttattttaaaagtcaaccgaaccgaaccaaaccgcat 8568623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 21237792 - 21237841
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||||||| ||||||||||||||| | || |||||||||||    
T  21237792 ttggtttgattcagattttattttaaaagtcaatcaaatcaaaccaaacc 21237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 27054734 - 27054802
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| |||||||||||||||     ||| |  |||||||| ||||||||||||||||||||||||||    
T  27054734 caatccaaaccgcattggtttggtttg-----gatggctttttaaaaatcaaccgaaccaaaccaaaccgcatg 27054802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 3213233 - 3213292
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||  |||    |||||||| ||||||||||||||||||||||||||    
T  3213233 ttggtttggtttgatttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 3213292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 7697355 - 7697304
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaa 97  Q
    ||||||||||||||| | |||| |||||||||| ||||| ||||||||||||    
T  7697355 ttggtttggtttgatccggattttattttaaaattcaacagaaccaaaccaa 7697304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 32237732 - 32237665
Alignment:
Q  34 atccaaaccacattggtttggtttgattcagattgtatttt-aaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||| ||||||||| ||||| |||  ||| |||||| |||||||||||||||| |||||||||    
T  32237732 atccaaaccgcattggtttagtttggttcgaattttatttttaaaagtcaaccgaaccgaaccaaacc 32237665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 47646731 - 47646782
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaa 97  Q
    ||||||||||||| |||| | | |||||||||| ||||||||||||||||||    
T  47646731 ttggtttggtttggttcaaactttattttaaaaatcaaccgaaccaaaccaa 47646782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 2308130 - 2308180
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||| || |||| ||| |||||||||| |||||||||||||||||||||    
T  2308130 tttggtgtggttcaaattttattttaaaaatcaaccgaaccaaaccaaacc 2308180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 8768999 - 8769033
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  8768999 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 8769033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 10671867 - 10671833
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  10671867 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 10671833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 11206394 - 11206428
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  11206394 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 11206428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 16535759 - 16535813
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||| |||| |||||||||||||||||||||| ||  ||||||||||    
T  16535759 ttggtttggttcggattttattttaaaagtcaaccgaacctaatgaaaccgcatg 16535813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 16629903 - 16629849
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||| |||| |||||||||||||||||||||| ||  ||||||||||    
T  16629903 ttggtttggttcggattttattttaaaagtcaaccgaacctaatgaaaccgcatg 16629849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 47069715 - 47069681
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  47069715 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 47069681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 47204493 - 47204527
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  47204493 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 47204527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 47903294 - 47903260
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  47903294 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 47903260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 524882 - 524935
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| ||  |||| ||||||||||||||| |||| |||||||||||||||    
T  524882 ttggtttggtttggattttattttaaaagtcaatcgaatcaaaccaaaccgcat 524935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 29211660 - 29211713
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||||||||| ||| |||||||||| |||| || ||||||| |||||||||    
T  29211660 ttggtttggtttggttcggattgtatttcaaaaatcgaccgaacgaaaccaaac 29211713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 27456408 - 27456372
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||||| |||| |||||||||||||||    
T  27456408 tattttaaaagtcaacagaactaaaccaaaccgcatg 27456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 55467639 - 55467764
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatgnnnnnnnatcttacagttcggattac 131  Q
    ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||        ||||| |||||||||| ||    
T  55467639 caatccaaaccgcattggtttgatttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcatacttatttatcttgcagttcggatgac 55467738  T
Q  132 atttagcctcacacctgaaccaaacc 157  Q
     |||||||||| | | ||||||||||    
T  55467739 ttttagcctcaaaaccgaaccaaacc 55467764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 54122092 - 54122034
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  54122092 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcat 54122034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 2832409 - 2832459
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2832409 tttggtttgattcggattttattttaaaagtcaaccgaaccaaaccaaacc 2832459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 10481660 - 10481709
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10481660 tttggtttgattcaaattttattttaaaagtcaaccgaaccaaaccaaac 10481709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 37045406 - 37045328
Alignment:
Q  21 caccaaccgat-caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||||||| ||| |||||||| |||||||||||||| ||| |||| |||||| |||| |||||||||||||||||||    
T  37045406 caccaaccgatacaacccaaaccatattggtttggtttggttcggattttatttt-aaagccaaccgaaccaaaccaaac 37045328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 17144741 - 17144799
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||| |||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||    
T  17144741 ttggcttggtttgcttcggattctattttaaaagtcaaccgaaccaaaccaatccgcat 17144799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 45699698 - 45699636
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    ||||||||||||||| | |||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  45699698 ccaaaccacattggtcttgtttgattcaaattttattttaaaagtcaatcgaacaaaaccaaa 45699636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 50579004 - 50579065
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    ||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| |||||||||    
T  50579004 ccaaaccacattggtttggtttg-ttcggattttatttttaaagtcaaccgaagcaaaccaaa 50579065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 26291971 - 26292024
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    ||||||||| |||||||| |||||||||| |||||||||||||| |||||||||    
T  26291971 tttggtttggttcagattctattttaaaaatcaaccgaaccaaagcaaaccgca 26292024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 35402202 - 35402275
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| ||||||||||||||| ||  |||    |||||||| ||||||||||||||||||||||||||    
T  35402202 caatccaaaccgcattggtttggtttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 35402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 42363240 - 42363362
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatgnnnnnnnatcttacagttcggattacatttagcctcacacctga 149  Q
    ||||||||| ||| |||| | |||| ||||||||||||||||||||||||||||||       ||||| | ||||  ||||| |||| ||||| | | ||    
T  42363240 tttggtttggttcggattttgtttttaaagtcaaccgaaccaaaccaaaccgcatgattttttatcttgcggttcaaattacttttaccctcaaaaccga 42363339  T
Q  150 accaaaccacaatgcgaacaccc 172  Q
    |||||||| || |||||||||||    
T  42363340 accaaaccgcactgcgaacaccc 42363362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 2566315 - 2566395
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||| ||| |||||||||| | || |||||| |||||||||    
T  2566315 caccaaccgatccaatccaaaccacattgattttgtttggttcaaattttattttaaaacttaatcgaaccgaaccaaacc 2566395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 26758292 - 26758240
Alignment:
Q  49 gtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    ||||||||||  ||||| | |||||||||||||||||||||||||||||||||    
T  26758292 gtttggtttggatcagactttattttaaaagtcaaccgaaccaaaccaaaccg 26758240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 51191790 - 51191718
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||| ||| ||||||||||| ||| | ||  |||||||||  ||||||||||||||||||||||||    
T  51191790 caatccaaaccgcatcggtttggtttggttcggttttcattttaaaatccaaccgaaccaaaccaaaccgcat 51191718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 44651035 - 44650976
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||| |||||||| ||| |||| |||||| |||||||||| |||||||||||||||||||    
T  44651035 ttggattggtttggttcggattttatttttaaagtcaaccaaaccaaaccaaaccgcatg 44650976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 52632105 - 52632054
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    |||||||| ||| ||||||||||||||||| ||||||| |||||||||||||    
T  52632105 ttggtttggttcggattgtattttaaaagttaaccgaatcaaaccaaaccgc 52632054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 8913986 - 8913940
Alignment:
Q  180 caaaattaaacaactaatacaacaaactttaatattgtgaggagcac 226  Q
    ||||||| |||||||||| |||||| |||||||||||||||||||||    
T  8913986 caaaattgaacaactaatgcaacaacctttaatattgtgaggagcac 8913940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 20846525 - 20846484
Alignment:
Q  64 gattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  20846525 gattttattttaaaagtcaaccgaaccaaaccaaagcgcatg 20846484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 40483999 - 40483935
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| |||| ||||||||||||     | |||||||||||||||| ||||||||||||||||||||    
T  40483999 ccaaaccatattgatttggtttgatt-----tttattttaaaagtcaactgaaccaaaccaaaccgcatg 40483935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 45915239 - 45915272
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||||||||||||||||||||||||    
T  45915239 ttttaaaagtcaaccgaaccaaaccaaaccgcat 45915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 38680878 - 38680818
Alignment:
Q  45 attggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||| |||| ||| ||||||||||||||||  |||| ||||||||| ||||    
T  38680878 attggtttggtttggttcaaattttattttaaaagtcaacttaaccgaaccaaacctcatg 38680818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 4669658 - 4669717
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||| |||    |||||||| ||||||||||||||||||||||||||    
T  4669658 ttggtttggtttggttcggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 4669717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 6004387 - 6004457
Alignment:
Q  30 atcaatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| |||||||||||||||     |||    |||||||| ||||||||||||||||||||||||||    
T  6004387 atcaatccaaaccgcattggtttggtttg-----gatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 6004457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 25465872 - 25465821
Alignment:
Q  45 attggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacca 96  Q
    |||||||||||||| ||| |||| ||||||||||||||| | ||||||||||    
T  25465872 attggtttggtttggttcggattttattttaaaagtcaatcaaaccaaacca 25465821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 38652023 - 38652058
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||| |||||||||||||||||||||||||||||    
T  38652023 tatttttaaagtcaaccgaaccaaaccaaaccgcat 38652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 27054160 - 27054094
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    ||||||||| | ||||||||||||||| ||   ||| |||||||||| |||||| ||||||||||||    
T  27054160 caatccaaatcgcattggtttggtttggtttgaattttattttaaaattcaaccaaaccaaaccaaa 27054094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 51149693 - 51149727
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  51149693 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 51149727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 55129780 - 55129746
Alignment:
Q  66 ttgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||| |||||||||||||||||||||||||    
T  55129780 ttgtattttcaaagtcaaccgaaccaaaccaaacc 55129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 8557969 - 8558026
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    ||||||||||||| ||| |||| |||||| |||||||| | |||| ||||||||||||    
T  8557969 ttggtttggtttggttcggattttatttttaaagtcaatcaaaccgaaccaaaccgca 8558026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 45629277 - 45629212
Alignment:
Q  33 aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    ||||||||||  ||||||||| |||| ||| || | ||||||||||||||||| || |||||||||    
T  45629277 aatccaaaccgtattggtttgatttggttcggagtttattttaaaagtcaaccaaatcaaaccaaa 45629212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 4280328 - 4280296
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    ||||||||||||||||||| |||||||||||||    
T  4280328 tattttaaaagtcaaccgagccaaaccaaaccg 4280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 33361000 - 33360968
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    |||||||| ||||||||||||||||||||||||    
T  33361000 ttttaaaaatcaaccgaaccaaaccaaaccgca 33360968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 48167327 - 48167280
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    |||||||||||||  ||| |||||||||||||||||||| |||||||||    
T  48167327 tttggtttgattcgaattttattttaaaagtcaaccgaa-caaaccaaa 48167280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 41461179 - 41461095
Alignment:
Q  21 caccaaccgat-caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||||    
T  41461179 caccaaccgattcaatccaaaccgcattggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaaccaaaccgcat 41461095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 17762827 - 17762754
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||| |||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  17762827 caatccaaaccacatcggtttgatttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcatg 17762754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 27301485 - 27301554
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||| ||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||    
T  27301485 ccaaaccgcattggtttggtttggttcaaattttattttaaaagtcaaccgaatcaaaccaaaccgcatg 27301554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 12041605 - 12041728
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatgnnnnnnnatcttacagttcggattacatttagcctcacacctgaa 150  Q
    |||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||       ||||||| |||| ||| || |||||||||| | | |||    
T  12041605 ttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcatgtttttttatcttacggttcagatgacttttagcctcaaaaccgaa 12041704  T
Q  151 ccaaaccacaatgcgaacacccct 174  Q
    ||||||||||  || |||||||||    
T  12041705 ccaaaccacaccgcaaacacccct 12041728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 44085556 - 44085502
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  44085556 ttggtttgattcagattttatttttaaagtcaaccgaaccaaaccaaaccgcatg 44085502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 5862646 - 5862700
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  5862646 tttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcat 5862700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 13193995 - 13193917
Alignment:
Q  22 accaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||||||| || ||||||  |||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||    
T  13193995 accaaccgatccaacccaaactgcattggtttgatttggttcggattttattttaaaagtcaaccgaaccaaaccaaac 13193917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 28790587 - 28790518
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||||||||| ||  |||| |||||||||||||||||||| | || |||||||||||    
T  28790587 ccaaaccacattggtttggtttggtttggattttattttaaaagtcaaccgaatctaatcaaaccgcatg 28790518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 1331086 - 1331030
Alignment:
Q  36 ccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaa 97  Q
    |||||||||||||||||||||||     |||| |||||||||||||||||||||||||||||    
T  1331086 ccaaaccacattggtttggtttg-----gattttattttaaaagtcaaccgaaccaaaccaa 1331030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 30759659 - 30759718
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| |||| ||| ||||||||||| |||||||| |||||||||| |||||    
T  30759659 ttggtttggtttggttcaaattttattttaaaagccaaccgaatcaaaccaaactgcatg 30759718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 36500622 - 36500703
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    |||||||||||| || ||||||| || |||||||||| | |||| ||||||||||||||||||| | || |||| |||||||    
T  36500622 caccaaccgatccaacccaaaccgcaatggtttggttcggttcatattgtattttaaaagtcaatcaaagcaaatcaaaccg 36500703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 11678095 - 11678014
Alignment:
Q  18 ccacaccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||||| ||| |||||| || | |||  ||||| ||| |||| ||||||||||||||||||||||||| ||||||    
T  11678095 ccacaccaaccgatccaattcaaaccgcaatagtt--gtttggttcggattttattttaaaagtcaaccgaaccaaatcaaacc 11678014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 11695573 - 11695492
Alignment:
Q  18 ccacaccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||||| ||| |||||| || | |||  ||||| ||| |||| ||||||||||||||||||||||||| ||||||    
T  11695573 ccacaccaaccgatccaattcaaaccgcaatagtt--gtttggttcggattttattttaaaagtcaaccgaaccaaatcaaacc 11695492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 21480827 - 21480870
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaa 93  Q
    ||||||||  |||||||| |||||||||||||||||||||||||    
T  21480827 tttggtttagttcagattttattttaaaagtcaaccgaaccaaa 21480870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 9811437 - 9811403
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  9811437 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 9811403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 17916887 - 17916921
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  17916887 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 17916921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 36413676 - 36413710
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  36413676 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 36413710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 44035353 - 44035319
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  44035353 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 44035319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 44979805 - 44979839
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  44979805 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 44979839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 12841612 - 12841563
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    ||||||||||| | ||| ||||||||||||||| |||||| |||||||||    
T  12841612 ttggtttggttcggttcggattgtattttaaaattcaaccaaaccaaacc 12841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 44336844 - 44336785
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  44336844 ttggtttggtttggttcggattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 44336785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 40436534 - 40436449
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| || ||||||| ||||||||||||| | |||| ||| |||||| |||||||||||||||||||||||| |||||    
T  40436534 caccaaccgatccaacccaaaccgcattggtttggttcggttcaaattttatttttaaagtcaaccgaaccaaaccaaacggcatg 40436449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 9012822 - 9012897
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    |||||||||||| || ||||||| ||||||||||||||| ||| |||||||||||||||||||| | |||||||||    
T  9012822 caccaaccgatccaacccaaaccgcattggtttggtttggttcggattgtattttaaaagtcaatcaaaccaaacc 9012897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 4785307 - 4785249
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||    
T  4785307 ttggtttggtttggttcatattatattttaaaagtcaaccgaaccaaatcaaaccgcat 4785249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 36340771 - 36340829
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  36340771 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcat 36340829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 11219021 - 11218963
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| ||||||||||| | ||||||||||||||||| |||||||||||| |||||    
T  11219021 ttggtttgatttgattcagactttattttaaaagtcaaccaaaccaaaccaaatcgcat 11218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 19539478 - 19539400
Alignment:
Q  18 ccacaccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    ||||||||||||||| || |||| || ||||||||||||||| ||| |||| |||||||||||||||||  ||||||||    
T  19539478 ccacaccaaccgatccaacccaatccgcattggtttggtttggttcggattttattttaaaagtcaaccataccaaacc 19539400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 33566028 - 33565970
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||||    
T  33566028 ttggtttggtttggttcgaattttattttagaagtcaaccgaaccaaaccaaaccgcat 33565970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 7428435 - 7428503
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| |||| |||||||| ||     ||| |||||||||||||||||||||||||||||||||||||    
T  7428435 caatccaaaccgcattagtttggttcga-----attttattttaaaagtcaaccgaaccaaaccaaaccgcatg 7428503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 45366393 - 45366324
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    ||||||||||  ||||||||||||||||||| | ||  |||||||||| ||||||||||||| |||||||    
T  45366393 caatccaaactgcattggtttggtttgattcggttttcattttaaaaggcaaccgaaccaaatcaaaccg 45366324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 6591299 - 6591245
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| ||   ||| ||||||||||||||||||||||||||||||||    
T  6591299 ttggtttggtttggttagaattttattttaaaagtcaaccgaaccaaaccaaacc 6591245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 22811198 - 22811242
Alignment:
Q  60 ttcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||    
T  22811198 ttcaaattttattttaaaagtcaaccgaaccaaaccaaacagcat 22811242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 35688407 - 35688475
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||||||||||| ||  | ||  |||||||||||||| ||||||||| ||||| |||||    
T  35688407 caaaccacattggtttggtttggttgggttttcattttaaaagtcaatcgaaccaaatcaaactgcatg 35688475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 3006608 - 3006642
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  3006608 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 3006642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 5803282 - 5803316
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  5803282 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 5803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 6616994 - 6616940
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| ||   ||| |||||||||||||||||||| |||||||||||    
T  6616994 ttggtttggtttggttagaattttattttaaaagtcaaccgaaacaaaccaaacc 6616940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 10661200 - 10661166
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  10661200 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 10661166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 24682102 - 24682159
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||| |||| |||||||||| ||||    
T  24682102 ttggtttggtttggttc-gattttattttaaaagtcaatcgaatcaaaccaaactgcat 24682159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 31497610 - 31497664
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| ||  |||  |||||| |||||||||||||||||||||||||    
T  31497610 ttggtttggtttggtttggatgttatttttaaagtcaaccgaaccaaaccaaacc 31497664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13325397 - 13325324
Alignment:
Q  20 acaccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaa 92  Q
    |||| |||||||| |||||||||   |||| ||| ||||| |||||||| |||||||||| |||||||||||||    
T  13325397 acactaaccgatccaatccaaactgtattgattttgtttggttcagattatattttaaaattcaaccgaaccaa 13325324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 6649587 - 6649539
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    |||| |||||||  |||| |||||||||||||||| |||||||||||||    
T  6649587 tttgttttgattaggattttattttaaaagtcaactgaaccaaaccaaa 6649539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 15272317 - 15272373
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    ||||||||||||| ||| ||||||  || ||||||||||  ||||||||||||||||    
T  15272317 ttggtttggtttggttcggattgtgcttgaaaagtcaactaaaccaaaccaaaccgc 15272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 15452686 - 15452742
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    ||||||||||||| ||| ||||||  || ||||||||||  ||||||||||||||||    
T  15452686 ttggtttggtttggttcggattgtgcttgaaaagtcaactaaaccaaaccaaaccgc 15452742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 18396426 - 18396342
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| || ||||||||||||||||||||||  ||| |||| ||| |||||||||||| |||||||||||||||||||    
T  18396426 caccaaccgatccaacccaaaccacattggtttggttttgttcggattttatcttaaaagtcaactgaaccaaaccaaaccgcat 18396342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 5122389 - 5122454
Alignment:
Q  40 accacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||||||||||| |||||||||||    
T  5122389 accacattggtttggtttggttcggattttatttttaaagtcaaccgaaccaaatcaaaccgcatg 5122454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 36106421 - 36106482
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    |||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  36106421 caaaccgcattggtttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaa 36106482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 20986493 - 20986435
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  20986493 ttggtttggtttggttcatattttattttataagtcaaccgaaccaaaccaaaccgcat 20986435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 23625912 - 23625970
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  23625912 ttggtttgggttgattcagattttattttaaaagtcaagcgaaccaaacaaaaccgcat 23625970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 14866842 - 14866789
Alignment:
Q  52 tggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  14866842 tggtttgatttagattttattttaaaagtcaactgaaccaaaccaaaccgcatg 14866789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 28147864 - 28147795
Alignment:
Q  33 aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    |||||||||| |||||||||||||||  ||||||| ||||||||||||||||  ||| ||||||||||||    
T  28147864 aatccaaaccgcattggtttggtttggatcagattatattttaaaagtcaacaaaactaaaccaaaccgc 28147795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 48338426 - 48338353
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||| |||||| ||||| ||||||||| ||  |||| ||||||||||||||||||||||||||||||| |||||    
T  48338426 caattcaaaccgcattgatttggtttggtttggattttattttaaaagtcaaccgaaccaaaccaaactgcatg 48338353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 48602509 - 48602587
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    |||||||||||| || ||||||| ||||||||||||| |     ||||||||||| ||||||||||||||||||||||||||||    
T  48602509 caccaaccgatccaacccaaaccgcattggtttggttag-----gattgtattttcaaagtcaaccgaaccaaaccaaaccgca 48602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 12842414 - 12842368
Alignment:
Q  176 caaccaaaattaaacaactaatacaacaaactttaatattgtgagga 222  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  12842414 caaccaaaattcaacaactaatacaacaacctttaatattgtgagga 12842368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 19753532 - 19753590
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| |||  ||| ||||||||||||||||||||||||| ||||||||||    
T  19753532 ttggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaatcaaaccgcat 19753590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 19786274 - 19786216
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| |||  ||| ||||||||||||||||||||||||| ||||||||||    
T  19786274 ttggtttggtttggttcgaattttattttaaaagtcaaccgaaccaaatcaaaccgcat 19786216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 48293421 - 48293475
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||    
T  48293421 ttggtttggttcggattttattttaaaagacaaccgaaccaaaccaaaccgcatg 48293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 8311982 - 8311898
Alignment:
Q  21 caccaaccgatcaatcc-aaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| | || |||| |||| |||||||||||| ||||||  |||||||||||| | |||||||||||||||| ||||    
T  8311982 caccaaccgatccaacctaaactacatcggtttggtttgaatcagatattattttaaaagtaatccgaaccaaaccaaactgcat 8311898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 23449986 - 23450053
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||| |||||||||||| ||     |||| |||||||||||| |||||||||||||||||||||||    
T  23449986 caatccaaaccgcattggtttggtgtg-----gattatattttaaaagttaaccgaaccaaaccaaaccgcat 23450053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 32223330 - 32223389
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| |||||||||| |||||||||| ||| |||| || ||||||||||||    
T  32223330 ttggtttggtttggttcagattgtgttttaaaagtaaacggaacaaatccaaaccgcatg 32223389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 42198864 - 42198817
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaac 84  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  42198864 caaaccacattagtttggtttggttcagattttattttaaaagtcaac 42198817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 54274017 - 54274087
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||||||||||||| ||| | ||  ||||||||||    ||||||||||||||||||||||    
T  54274017 caatccaaaccacattggtttggtttggttcggttttcattttaaaag---cccgaaccaaaccaaaccgcatg 54274087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 42557815 - 42557737
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtat-----tttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| ||||||||||||||||||  | ||| ||     ||||||| ||||||||||||||||||||||||||    
T  42557815 caatccaaaccgcattggtttggtttgatttggtttggatgactttttaaaaatcaaccgaaccaaaccaaaccgcatg 42557737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 18536655 - 18536708
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||| ||||| ||| |||||| |||||||||||||||||||||| ||||||    
T  18536655 ttggttttgtttggttcggattgtgttttaaaagtcaaccgaaccaacccaaac 18536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 29335130 - 29335179
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    ||||||||||||| |||| ||||||||||||||  |||||||||||||||    
T  29335130 ttggtttggtttggttcatattgtattttaaaaaccaaccgaaccaaacc 29335179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 40806815 - 40806888
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||  ||||||||||||||| ||  |||  | |||||||| ||||||||||||||||||| ||||||    
T  40806815 caatccaaactgcattggtttggtttggtttggatgattttttaaaaatcaaccgaaccaaaccaaatcgcatg 40806888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 4688762 - 4688690
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||| ||||||||||||||||||||| || ||||    |||||||||||||||||| | |||||||| ||||    
T  4688762 caatcaaaaccacattggtttggtttggttaagataactttttaaaagtcaaccgaatcgaaccaaactgcat 4688690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 29232819 - 29232767
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    |||||||  ||| |||| ||||||||||||||||||||| |||||||||||||    
T  29232819 ttggtttagttcggattttattttaaaagtcaaccgaactaaaccaaaccgca 29232767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 29636845 - 29636786
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||  ||| |  |||||||| ||||||||||||||||||||||||||    
T  29636845 ttggtttggtttggtttggatggctttttaaaaatcaaccgaaccaaaccaaaccgcatg 29636786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 29644161 - 29644195
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  29644161 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 29644195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 30194011 - 30194045
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  30194011 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 30194045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 50570994 - 50571028
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  50570994 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 50571028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 23937554 - 23937587
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| |||||||||||||||||||||||||    
T  23937554 ttttaaaaatcaaccgaaccaaaccaaaccgcat 23937587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 36077619 - 36077586
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| |||||||||||||||||||||||||    
T  36077619 ttttaaaaatcaaccgaaccaaaccaaaccgcat 36077586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 2933690 - 2933642
Alignment:
Q  176 caaccaaaattaaacaactaatacaacaaactttaatattgtgaggagc 224  Q
    ||||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  2933690 caaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagc 2933642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 18319551 - 18319615
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaac 84  Q
    |||||||||||| || ||||||| ||||||||||||||| | |  ||| ||||||||||||||||    
T  18319551 caccaaccgatccaacccaaaccgcattggtttggtttggtacgaattttattttaaaagtcaac 18319615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 18399130 - 18399066
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaac 84  Q
    |||||||||||| || ||||||| ||||||||||||||| | |  ||| ||||||||||||||||    
T  18399130 caccaaccgatccaacccaaaccgcattggtttggtttggtacgaattttattttaaaagtcaac 18399066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 40494520 - 40494440
Alignment:
Q  21 caccaaccgatcaatc-caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||||||||| | | |||||||||||  |||||||||||  | | | ||||||||||||| || |||||||||||||||    
T  40494520 caccaaccgatccaacacaaaccacattaatttggtttgatataaactttattttaaaagtctactgaaccaaaccaaacc 40494440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 45983432 - 45983396
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  45983432 tatttttaaagtcaaccgaatcaaaccaaaccgcatg 45983396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 6633400 - 6633341
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacca 96  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  6633400 caaaccacattggtttggtttggttcagattttattttaaaagtcaaccaaaccaaacca 6633341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 27572056 - 27572115
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||    
T  27572056 ttggtttggtttggttcggattttattttaaaagacaaccgaaccaaaccaaaccgcatg 27572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 17132101 - 17132159
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  17132101 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcat 17132159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 41454935 - 41454881
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  41454935 ttggtttggtttggttcagattttattttaaaagtcaaccgaaccgaaccaaacc 41454881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 14652550 - 14652465
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||||| |||||| ||||||||| |||||||| |||| ||||||    
T  14652550 caccaaccgatccaacccaaatcgcattggtttggtttggttcagattttatttttaaagtcaactgaaccaaatcaaatcgcatg 14652465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 36567814 - 36567735
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| |||||||||| ||||||||||||||||     ||| ||||||||||||||||| |||| |||||||||||||    
T  36567814 caccaaccgatccaatccaaaccgcattggtttggtttga-----attttattttaaaagtcaaccaaaccgaaccaaaccgcat 36567735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 40692561 - 40692507
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  40692561 tttggtttgattca-attttattttaaaagtcaaccgaaccaaaccaaatcgcatg 40692507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 35240835 - 35240893
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| |||||| |||||||||||||||||| ||||||||||    
T  35240835 ttggtttggtttggttcggattttatttttaaagtcaaccgaaccaaatcaaaccgcat 35240893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 32244385 - 32244445
Alignment:
Q  44 cattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||| ||||| |||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  32244385 catttgtttgatttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcat 32244445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 563901 - 563964
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    |||||||||||| |||| ||| |||||||||  ||| ||||||||||||||||| |||||||||    
T  563901 caatccaaaccaaattgattttgtttgattcgaattttattttaaaagtcaaccaaaccaaacc 563964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 22747584 - 22747643
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||  |||| ||| ||||||||||||||| ||||||||| |||||||||||    
T  22747584 ttggtttggttttgttcaaattttattttaaaagtcaatcgaaccaaatcaaaccgcatg 22747643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 20191976 - 20192042
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    |||| |||||| |||||||||| |||  ||| |||| ||||||||||||||||||||||||| ||||    
T  20191976 caattcaaaccgcattggtttgatttagttcggattttattttaaaagtcaaccgaaccaaatcaaa 20192042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 2422873 - 2422824
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||||| | |||||| ||||||||||||||||| ||||||||||||||    
T  2422873 ttggtttggtccagattatattttaaaagtcaaccaaaccaaaccaaacc 2422824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 40331510 - 40331555
Alignment:
Q  55 tttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  40331510 tttggttcggattttattttaaaagtcaaccgaaccaaaccaaacc 40331555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 2589023 - 2588987
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2589023 tattttaaaagtcaaccaaaccaaaccaaaccgcatg 2588987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 18845609 - 18845545
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaac 84  Q
    |||||||||||| || ||||||| || |||||||||||| |||||||| |||||||||| |||||    
T  18845609 caccaaccgatccaacccaaaccgcagtggtttggtttggttcagattttattttaaaactcaac 18845545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 26007388 - 26007435
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaa 93  Q
    ||||||||||||| |||||||| |||||||||||| |||| |||||||    
T  26007388 ttggtttggtttggttcagattttattttaaaagtaaaccaaaccaaa 26007435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 35727032 - 35726981
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    |||||||| |||||||||||||||| | ||||||| ||| ||||||||||||    
T  35727032 ttggtttggttcagattgtattttagaggtcaaccaaacaaaaccaaaccgc 35726981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 1048725 - 1048783
Alignment:
Q  47 tggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| ||  |||| ||||| ||||||||| || ||||||||||||||||||    
T  1048725 tggtttggtttggtttggattttatttcaaaagtcaatcggaccaaaccaaaccgcatg 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 2797152 - 2797190
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaac 89  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  2797152 ttggtttgattcagattttattttcaaagtcaaccgaac 2797190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 11917452 - 11917418
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  11917452 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 11917418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 27886452 - 27886486
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  27886452 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 27886486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 36177141 - 36177175
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  36177141 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 36177175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 8409037 - 8409004
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| |||||||||||||||||||||||||    
T  8409037 ttttaaaaatcaaccgaaccaaaccaaaccgcat 8409004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 6595049 - 6594997
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    ||||||||||||||||  |||  |||||| ||||||||||||||| |||||||    
T  6595049 ttggtttggtttgatttggatgttatttttaaagtcaaccgaaccgaaccaaa 6594997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 36760180 - 36760136
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaacc 95  Q
    |||||||| ||| |||| ||||||||||||||| |||||||||||    
T  36760180 ttggtttggttcggattttattttaaaagtcaatcgaaccaaacc 36760136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 42544703 - 42544671
Alignment:
Q  73 ttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||| ||||||||||||||||||||||||||    
T  42544703 ttaaaaatcaaccgaaccaaaccaaaccgcatg 42544671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 12108549 - 12108634
Alignment:
Q  21 caccaaccgatcaatc-caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| | | |||||||||||||||||||||| |||| | | |||||||||||||||| |||||||| |||||||||||    
T  12108549 caccaaccgatctaacgcaaaccacattggtttggtttggttcaaactatattttaaaagtcaactgaaccaaaacaaaccgcatg 12108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 19135127 - 19135181
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  19135127 tttggtttggttcatattttattttaaaagtcaaccgaaccaaaccaaaccgcat 19135181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 22413940 - 22413851
Alignment:
Q  21 caccaaccgatcaat-ccaaaccacattggtttggtttgatt-----cagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| || ||||||| ||||||||| ||||| ||     |||||| ||||||||||||||||||||||||||||||||||||    
T  22413940 caccaaccgatccattccaaaccgcattggtttcgtttgtttttgttcagattttattttaaaagtcaaccgaaccaaaccaaaccgcat 22413851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31945426 - 31945487
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaa 93  Q
    ||||||||||| |||||| |||||||||||  |||| |||||||||||||||||||||||||    
T  31945426 caatccaaaccgcattggattggtttgattttgattttattttaaaagtcaaccgaaccaaa 31945487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 9686124 - 9686071
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  9686124 ttggtttggttcggattttattttaaaagttaaccgaaccaaaccaaaccgcat 9686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 6266444 - 6266495
Alignment:
Q  176 caaccaaaattaaacaactaatacaacaaactttaatattgtgaggagcacg 227  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  6266444 caactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacg 6266495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 14940588 - 14940642
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||| |||| ||||| ||||||||||||||||||||||||| |||||    
T  14940588 ttggtttggttcggattttatttaaaaagtcaaccgaaccaaaccaaactgcatg 14940642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 30752576 - 30752543
Alignment:
Q  72 tttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||||||||||||||||||||    
T  30752576 tttaaaagtcaaccgaaccaaaccaaaccgcatg 30752543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 892375 - 892411
Alignment:
Q  69 tattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||| ||||||||||||||||||||||||    
T  892375 tattttaaaagttaaccgaaccaaaccaaaccgcatg 892411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 13092081 - 13092021
Alignment:
Q  31 tcaatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaacca 91  Q
    |||||||||||| |||||||||| |||||| |  ||| ||||||||||||||||| |||||    
T  13092081 tcaatccaaaccgcattggtttgctttgatacgaattttattttaaaagtcaaccaaacca 13092021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 29048193 - 29048141
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgca 103  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||||| ||||    
T  29048193 ttggtttagttcggattttattttaaaagtcaaccgaaccaaaccaaatcgca 29048141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 6266951 - 6266916
Alignment:
Q  70 attttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6266951 attttaaaagtcaaccgtaccaaaccaaaccgcatg 6266916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 28610703 - 28610636
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    ||||||||||| |||| |||||||||| ||||| ||  |||||||||| ||||| |||||||| ||||    
T  28610703 caatccaaaccgcattagtttggtttggttcagttttcattttaaaagccaaccaaaccaaactaaac 28610636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 28633006 - 28632947
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||| |||||| |||| ||  |||||||||||||||||||||||||| ||| ||||||    
T  28633006 ttggttcggtttggttcaaatattattttaaaagtcaaccgaaccaaacaaaatcgcatg 28632947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 4562929 - 4562875
Alignment:
Q  45 attggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaac 99  Q
    |||||||||||||| || | ||| |||||||||| ||||| ||||||||||||||    
T  4562929 attggtttggtttggtttaaattttattttaaaaatcaactgaaccaaaccaaac 4562875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 5874188 - 5874222
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  5874188 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 5874222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 10590897 - 10590863
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  10590897 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 10590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 12270603 - 12270569
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  12270603 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 12270569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 24644955 - 24645021
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||  |||||||||||||||     |||| ||||||||||||||| |||| |||||||||||||||    
T  24644955 caatccaaactgcattggtttggtttg-----gattttattttaaaagtcaa-cgaatcaaaccaaaccgcat 24645021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 8165562 - 8165621
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||    
T  8165562 ttggtttggtttggttcagattttatttttaaagtcaaccgaaccgaaccaaaccgcatg 8165621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 21685553 - 21685612
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||    
T  21685553 ttggtttggtttggttctgattttattttaaaagtcaactgaaccaaaccaaaccgcatg 21685612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 32910352 - 32910439
Alignment:
Q  19 cacaccaaccgatcaatc-caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||| | | |||||| |||| ||||| |||| |||||||| |||||| |||||||||||||||||||||||| |||||    
T  32910352 cacaccaaccgatccaacacaaaccgcatttgtttgttttggttcagattctatttttaaagtcaaccgaaccaaaccaaactgcatg 32910439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 36203454 - 36203513
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||    
T  36203454 ttggtttggttcggttcggattgtattttaaaagtcaaccgaaccaaatcaaaccgcatg 36203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 9330453 - 9330404
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  9330453 ttggtttgattcagaatgtattttaaaagtcaaccgaactaaaccaaacc 9330404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 12973662 - 12973573
Alignment:
Q  21 caccaaccgatc-aatccaaaccacatt-----ggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| |||||||||||||||     ||||||||||||||| |||| |||||| ||| |||||| ||||||||||||||||||    
T  12973662 caccaaccgatccaatccaaaccacattagtttggtttggtttgattcggattttattttcaaaatcaaccaaaccaaaccaaaccgcat 12973573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 33769963 - 33769891
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||| ||||||||||||||| ||||| ||  ||||| |||| |||||||| |||||||||||||||    
T  33769963 caatccaaaccgcattggtttggtttggttcagttttcattttgaaaggcaaccgaatcaaaccaaaccgcat 33769891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 50471324 - 50471240
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| |||| ||||| ||||||||||||||| ||  |||| ||||||||||  |||| |||||||||||||||||||    
T  50471324 caccaaccgatctaatctaaaccgcattggtttggtttggtttggattttattttaaaatgcaactgaaccaaaccaaaccgcat 50471240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 52380719 - 52380791
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||| |||| |||| ||||| |||| ||  ||||||||||||||||||||| ||||||||||||||    
T  52380719 caatccaaaccgcattagtttagtttggttcaaatcttattttaaaagtcaaccgaactaaaccaaaccgcat 52380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 11074410 - 11074465
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    ||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||    
T  11074410 ttggtttggttaggttcagattttatttttaaagtcaaccgaaccaaaccaaaccg 11074465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 39158334 - 39158393
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| |||||||| ||||||    
T  39158334 ttggtttggtttgattcagattttattttaaaagccgaccgaactaaaccaaaacgcatg 39158393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 16062946 - 16062880
Alignment:
Q  34 atccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||||||| ||| ||||||||||||||  ||| |||||||||||||||| ||| |||||||||||    
T  16062946 atccaaaccatattagtttggtttgattcgaattttattttaaaagtcaactgaatcaaaccaaacc 16062880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 6248148 - 6248099
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  6248148 ttggtttgattcaaattttattttaaaagtcaaccaaaccaaaccaaacc 6248099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 26345038 - 26345127
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggttt-----gattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||||||| |||||||||| ||||||||||||||     | ||| |||| |||||||||||||||||||| ||||| |||||||||    
T  26345038 caccaaccgatccaatccaaaccgcattggtttggttttgtttggttcggattttattttaaaagtcaaccgaatcaaactaaaccgcat 26345127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 50952047 - 50952095
Alignment:
Q  52 tggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||    
T  50952047 tggtttgattcgggttttattttaaaagtcaaccgaaccaaaccaaacc 50952095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 9250118 - 9250164
Alignment:
Q  54 gtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||    
T  9250118 gtttgattcaaattgtattttaaaagtcaaccggacaaaaccaaacc 9250164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 17651838 - 17651764
Alignment:
Q  36 ccaaaccacattggtttggtttgattcag-----attgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    ||||||| ||||||||||||||| |||||     ||| ||||||||||||||||||||| ||| |||||||||||    
T  17651838 ccaaaccgcattggtttggtttggttcagttcggattttattttaaaagtcaaccgaacaaaatcaaaccgcatg 17651764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 24630014 - 24629964
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacca 96  Q
    ||||||||||||| || ||||| ||||||||||||||||| ||||||||||    
T  24630014 ttggtttggtttggttaagattttattttaaaagtcaaccaaaccaaacca 24629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 52828888 - 52828835
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||| |||||    
T  52828888 ttggtttggttcagattttattttaaaagtcaaccg-accaaaccaaacagcatg 52828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 9962135 - 9962214
Alignment:
Q  24 caaccgatc-aatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgc 102  Q
    ||||||||| || ||||||||||||||||||||||| ||   ||| ||||| ||||||||||| || ||||| |||||||    
T  9962135 caaccgatccaacccaaaccacattggtttggtttggtttgaattttatttgaaaagtcaaccaaatcaaacaaaaccgc 9962214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 17989118 - 17989063
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccg 101  Q
    ||||||| | ||| ||| |||| ||||||||||||||||||||||||| |||||||    
T  17989118 ttggtttaggttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccg 17989063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 27507507 - 27507554
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaa 98  Q
    |||||||||||  |||| ||||||||||||||||||||| ||||||||    
T  27507507 ttggtttgatttggattttattttaaaagtcaaccgaactaaaccaaa 27507554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 8211325 - 8211291
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  8211325 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 8211291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 16537853 - 16537907
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||| |||| |||||||||||| |||| ||||||| |||||||||||    
T  16537853 ttggtttggttcggattttattttaaaagtgaaccaaaccaaatcaaaccgcatg 16537907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 20493795 - 20493761
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  20493795 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 20493761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 23475123 - 23475173
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaacca 96  Q
    ||||||||||||  |||| ||| |||||||||| |||||||||||||||||    
T  23475123 ttggtttggttttgttcaaattttattttaaaaatcaaccgaaccaaacca 23475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 32954084 - 32954050
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  32954084 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 32954050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 40095401 - 40095439
Alignment:
Q  21 caccaaccgatc-aatccaaaccacattggtttggtttg 58  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  40095401 caccaaccgatccaatccaaaccacattggtttggtttg 40095439  T

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Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 45691844 - 45691810
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  45691844 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 45691810  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 47984497 - 47984570
Alignment:
Q  31 tcaatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||| |||||||||||||||| |||||| |||| ||| ||||||||||||||  | ||||||| ||||| |||||    
T  47984497 tcaacccaaaccacattggtt-ggtttggttcatattttattttaaaagtcagtcaaaccaaatcaaactgcatg 47984570  T

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Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 50153476 - 50153426
Alignment:
Q  50 tttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||| ||| |||| ||||||||||||||||||||| ||| ||||||    
T  50153476 tttggtttggttcggattttattttaaaagtcaaccgaacaaaatcaaacc 50153426  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 2490044 - 2490097
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||| |||||    
T  2490044 ttggtttggttcgaattttattttaaaagtcaactgaaccaaaccaaatcgcat 2490097  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 10847543 - 10847588
Alignment:
Q  51 ttggtttgattcagattgtattttaaaagtcaaccgaaccaaacca 96  Q
    |||||||| ||| |||| |||||| |||||||||||||||||||||    
T  10847543 ttggtttggttctgattttattttcaaagtcaaccgaaccaaacca 10847588  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 62471 - 62413
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcat 104  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||    
T  62471 ttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcat 62413  T

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Target: scaffold0204 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25948 - 25875
Alignment:
Q  32 caatccaaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||| |||||| ||||| ||||||||| ||  |||| ||||||||||||||||||||||||||||||| |||||    
T  25948 caattcaaaccgcattgatttggtttggtttggattttattttaaaagtcaaccgaaccaaaccaaactgcatg 25875  T

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Target: scaffold0204; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 14603 - 14535
Alignment:
Q  37 caaaccacattggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||| |||| |||||||||| ||| ||||||  ||||| ||||||| ||||||||||||| ||||||    
T  14603 caaaccgcatttgtttggtttggttcggattgtgctttaagagtcaactgaaccaaaccaaatcgcatg 14535  T

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Target: scaffold0470 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 6312 - 6258
Alignment:
Q  46 ttggtttggtttgattcagattgtattttaaaagtcaaccgaaccaaaccaaacc 100  Q
    ||||||||||||| ||   ||| |||||||||||||||||||| |||||||||||    
T  6312 ttggtttggtttggttagaattttattttaaaagtcaaccgaatcaaaccaaacc 6258  T

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Target: scaffold0308 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 5919 - 5953
Alignment:
Q  71 ttttaaaagtcaaccgaaccaaaccaaaccgcatg 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  5919 ttttaaaaatcaaccgaaccaaaccaaaccgcatg 5953  T

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