View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6952_low_1 (Length: 871)
Name: NF6952_low_1
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6952_low_1 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Original strand, 123789 - 124364
Alignment:
| Q |
16 |
aaaaagacacaccatgatatgtattagttaatttatagatcatattatnnnnnnnggaaaataataatgagttgagaattaggtatctaataaggaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123789 |
aaaaagacacaccatgatatgtattagttaatttatagatcatattataaaaaaaggaaaataataatgagttgagaattaggtatctaataaggaagaa |
123888 |
T |
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| Q |
116 |
gatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123889 |
gatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatga |
123988 |
T |
|
| Q |
216 |
agatgggctaaacatttgagattgaacacttagttgctgactttgtgacgatcctgcgtcatcaagaggcaacctaaaaccaaatcatcaaagtcaatac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123989 |
agatgggctaaacatttgagattgaacacttagttgctgactttgtgacgatcctgtgtcatcaagaggcaacctaaaaccaaatcatcaaagtcaatac |
124088 |
T |
|
| Q |
316 |
tttgcttaatatacttgaatgtgaatatattaatgactaattacccttgtttgaattgaaggacctctggtatttcaggattgataaatagctttgtagc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
124089 |
tttgcttaatatacttgaatgtgaatatattaatgactaattacccttgtttgaattgaagcacctctggtatttcaggattgataaatagctttgtagc |
124188 |
T |
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| Q |
416 |
attccatgaattagagactccgagttcatatttatctatacaatgccaagttgaattggaatcagccattattaggtgaattattaatggattaagaatg |
515 |
Q |
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| T |
124189 |
attccatgaattagagactccgagttcatatttatctatacaatgccaagttgaattggaatcagccattattaggtgaattattaatagattaagaatg |
124288 |
T |
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| Q |
516 |
tagtacttaatagtggataacctgtggcttccttaatcttagcattgtgcagaagaatgatagttggtccagcctg |
591 |
Q |
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| T |
124289 |
tagtacttaatagtggataacctgtggctttcttaatcttagcattgtgcagaagaatgatagttggtccagcctg |
124364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 660 - 871
Target Start/End: Original strand, 124369 - 124580
Alignment:
| Q |
660 |
ttcccctgtacatatatagaatttttatgatcagtttgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
759 |
Q |
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| T |
124369 |
ttcccctgtacatatatagaatttttatgatcagattgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
124468 |
T |
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| Q |
760 |
atccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
859 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124469 |
atccaaaagttgatttgaattttcctagatcgaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
124568 |
T |
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| Q |
860 |
cgtattaaatac |
871 |
Q |
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|||||||||||| |
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| T |
124569 |
cgtattaaatac |
124580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 8e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 145 - 294
Target Start/End: Original strand, 23697779 - 23697928
Alignment:
| Q |
145 |
tcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatgaagatgggctaaacatttgagattgaacac |
244 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
23697779 |
tcatttagtggtagaacaacaacactaccaatgaatctctcaatagatgagtattgcgttagagatgacgaagatgggataaacatctgagattgaacac |
23697878 |
T |
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| Q |
245 |
ttagttgctgactttgtgacgatcctgcgtcatcaagaggcaacctaaaa |
294 |
Q |
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||||||||||||| |||||| || || ||||||||||||||| |||||| |
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| T |
23697879 |
ttagttgctgactctgtgacaatgttgggtcatcaagaggcaaactaaaa |
23697928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 753 - 845
Target Start/End: Original strand, 23699617 - 23699709
Alignment:
| Q |
753 |
gtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaa |
845 |
Q |
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| T |
23699617 |
gtctttcatccagaagttgatttgtattttcctagatccaggtacagtttgagtgtatcctaattcatgaaatactccaatgacatctatcaa |
23699709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 23698015 - 23698106
Alignment:
| Q |
365 |
tttgaattgaaggacctctggtatttcaggattgataaatagctttgtagcattccatgaattagagactccgagttcatatttatctatac |
456 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||| |
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| T |
23698015 |
tttgaattgaaggacctcagggatttcaggattgataaatagctttgtagcattccatgcattagagactctgagttcgtacttatctatac |
23698106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 672
Target Start/End: Original strand, 23699478 - 23699539
Alignment:
| Q |
611 |
tttaggaattggataccaaagtctttccacagtgtacaactgaataatgttcccctgtacat |
672 |
Q |
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| T |
23699478 |
tttaggaattgaagaccatagtcttcccacagtgtacagtttaataatgttcccctgtacat |
23699539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 744 - 851
Target Start/End: Original strand, 22079326 - 22079433
Alignment:
| Q |
744 |
gtactgtaagtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatc |
843 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22079326 |
gtactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgattgtatcctaattcatgaaaggctccaatgacatctatc |
22079425 |
T |
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| Q |
844 |
aagcacat |
851 |
Q |
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|| ||||| |
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| T |
22079426 |
aaacacat |
22079433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 22078940 - 22079045
Alignment:
| Q |
355 |
attacccttgtttgaattgaaggacctctggtatttcaggattgataaatagctttgtagcattccatgaattagagactccgagttcatatttatctat |
454 |
Q |
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|||||||||||||||||| ||||||||| | | ||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
22078940 |
attacccttgtttgaattcaaggacctcgaggaattcaggattgataaacagcttggtagcattccatgcattagagaccccgagttcatatttatctat |
22079039 |
T |
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| Q |
455 |
acaatg |
460 |
Q |
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|||||| |
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| T |
22079040 |
acaatg |
22079045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 22079119 - 22079173
Alignment:
| Q |
532 |
ataacctgtggcttccttaatcttagcattgtgcagaagaatgatagttggtcca |
586 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22079119 |
ataacatgtggcttccttaatcttagcattgtgaagaagaatgatagttggtcca |
22079173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 22078709 - 22078755
Alignment:
| Q |
151 |
agtggtagaacaacagcactaccaatgaacctctcaatagatgagta |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22078709 |
agtggtagaacaacagcactaccaatgaacctttcaatagatgagta |
22078755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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