View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6952_low_4 (Length: 439)
Name: NF6952_low_4
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6952_low_4 |
 | |
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| [»] scaffold0481 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 421
Target Start/End: Original strand, 1479526 - 1479942
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgcccaattttacttcacttgtcaatttataaatacaaataaagcatgataaaa |
109 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
1479526 |
aagaatatccctcactagaaaagtacgattataatcccaaatgtcatgcccagttttacttcacttgtcacttaataaatacaaataaagcatgacaaaa |
1479625 |
T |
|
| Q |
110 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttataacaactc |
209 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1479626 |
ctagagcaaattttctgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttaaaacaactc |
1479725 |
T |
|
| Q |
210 |
gatcctttac----tttatcttacatatcagaacccaaaccctagcatactacatcaaattcaaataactatattctaaccaataataacaaagatgaaa |
305 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1479726 |
gatcctttactttatttatcttacatatcagaacccaaacccttgcataatacatcatattcaaataactatattctaaccaataataacaaagatgaaa |
1479825 |
T |
|
| Q |
306 |
cctttgaaggcnnnnnnnncttacttcatcatttggc--nnnnnnnttatttaagctgctcgcatatctctttctgttcagccacgatgaaggattcgag |
403 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1479826 |
cctttgaaggc-aaaaaaacttacttcatcatttggcaaaaaaaaattatttaagctactcacatatctctttctgttcagccacgatgaaggattcgag |
1479924 |
T |
|
| Q |
404 |
tcgcaaggattctcaaat |
421 |
Q |
| |
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|||||||||||||||||| |
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| T |
1479925 |
tcgcaaggattctcaaat |
1479942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1471780 - 1472041
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgcccaattttacttcacttgtcaatttataaatacaaataaagcatgataaaa |
109 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1471780 |
aagaatatccctcactagaaaagtaggattataatcccaaatatcatgcccagtttgacttcacttgtcactttataaatacaaataaagcatgataaaa |
1471879 |
T |
|
| Q |
110 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttataacaactc |
209 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
1471880 |
ctagagcaaattttttgttgcatcatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcttacattcatttttaaaacaactc |
1471979 |
T |
|
| Q |
210 |
gatcctttactttatcttacatatcagaacccaaaccctagcatactacatcaaattcaaat |
271 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
1471980 |
aatcttttactttatcttacatatcagaacccaaacccttgcataatacatcaaattcaaat |
1472041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1470146 - 1470402
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgcccaattttacttcacttgtcaatttataaatacaaataaagcatgataaaa |
109 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1470146 |
aagaatatccctcactagaaaagtaggattataatcccaaatgtcaagcccagttttacttcacttgtca-----taaatacaaataaagcatgataaaa |
1470240 |
T |
|
| Q |
110 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgca-catcagactaagaaatttggtgcctacattcatttttataacaact |
208 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1470241 |
ctagagcaaattttttgctgcaccatgctcgtgtaatctgacagattaatgcaacatcagactaagaaatttggtgcctacattcatttttaaaacaact |
1470340 |
T |
|
| Q |
209 |
cgatcctttactttatcttacatatcagaacccaaaccctagcatactacatcaaattcaaat |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||| |
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|
| T |
1470341 |
cgatcctttactttatcttacatattagaacccaaa-ccttgcataatacatcaaattcaaat |
1470402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1476803 - 1477062
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgcccaattttacttcacttgtcaatttataaatacaaataaagcatgataaaa |
109 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
1476803 |
aagaatatccctcactagaaaagtaggattataatcccaaatgtcatgcccagttttacttcacttgtcacttaataaatacaaataaagcatgataaaa |
1476902 |
T |
|
| Q |
110 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttataacaactc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
1476903 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctgcattcatttttaaaacagctc |
1477002 |
T |
|
| Q |
210 |
gatcctttactttatcttacatatcagaacccaaaccctagc---atactacatcaaattcaaat |
271 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| || ||| |||||||||||||||| |
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|
| T |
1477003 |
gatc-----ctttatctaacatatcagaacccaaacccttgcataataatacatcaaattcaaat |
1477062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1474651 - 1474906
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgcccaattttacttcacttgtcaatttataaatacaaataaagcatgataaaa |
109 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
1474651 |
aagaatatccctcactagaaaagtaggattataatcccaaatgtcatgcccagttttacttcacttttcactttataaatacaaataaagcatgataaaa |
1474750 |
T |
|
| Q |
110 |
ctagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttataacaactc |
209 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1474751 |
ctagagcaacttttttgttgaaccatgctcgtataatctgacagattaatgtacattagactaagaaatttggtgcctacattcatttttaaaacaactt |
1474850 |
T |
|
| Q |
210 |
gatcctttactttatcttacatatcagaacccaaaccctagcatactacatcaaattcaaat |
271 |
Q |
| |
|
||||||||||||| || ||||||||||||||| | ||||| ||||| | |||||||| |
|
|
| T |
1474851 |
gatcctttactttgtc------atcagaacccaaaccattgcataatacataatattcaaat |
1474906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 1470425 - 1470469
Alignment:
| Q |
268 |
aaataactatattctaaccaataataacaaagatgaaacctttga |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| |
|
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| T |
1470425 |
aaataactaaattctaaccaataataacaaggatgaaacctttga |
1470469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 1472064 - 1472108
Alignment:
| Q |
268 |
aaataactatattctaaccaataataacaaagatgaaacctttga |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1472064 |
aaataactaaattctaaccaataataacaaggatgaaacctttga |
1472108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 1477084 - 1477128
Alignment:
| Q |
268 |
aaataactatattctaaccaataataacaaagatgaaacctttga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
1477084 |
aaataactatattctaaccaataataacaaggatggaacctttga |
1477128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 1474929 - 1474973
Alignment:
| Q |
268 |
aaataactatattctaaccaataataacaaagatgaaacctttga |
312 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
1474929 |
aaataactttattcaaaccaataataacaaggatgaaacctttga |
1474973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 2838 - 2576
Alignment:
| Q |
10 |
aagaatatccctcgctagaaaagtacgattataatcccaaatgtcatgccc-aattttacttcacttgtcaatttataaatacaaataaagcatgataaa |
108 |
Q |
| |
|
||||| ||||||| | | ||||||| ||||||||||||||||||| ||||| |||||||||| |||||||| || ||||||||||||||||||||| ||| |
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|
| T |
2838 |
aagaacatccctcaccaaaaaagtaggattataatcccaaatgtcctgccccaattttactttacttgtcacttcataaatacaaataaagcatgacaaa |
2739 |
T |
|
| Q |
109 |
actagagcaaattttttgttgcaccatgctcgtataatctgacagattaatgcacatcagactaagaaatttggtgcctacattcatttttataacaact |
208 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||| ||||| | |
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|
| T |
2738 |
actagggcaaatattttgttgcaccatgctcgtataatctgacagattaatgcacatcagattaagaattttggtgcttacatttatttttaaaacaatt |
2639 |
T |
|
| Q |
209 |
cgatcctttactttatcttacatatcagaacccaaaccctagcatactacatcaaattcaaat |
271 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
2638 |
cgatcctttactttatctaacgtataagaacccaaacccttgcataatacatcaaattcaaat |
2576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 2553 - 2509
Alignment:
| Q |
268 |
aaataactatattctaaccaataataacaaagatgaaacctttga |
312 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2553 |
aaataacgctattgtaaccaataataacaaagatgaaacctttga |
2509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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