View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6952_low_5 (Length: 432)
Name: NF6952_low_5
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6952_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 38869215 - 38869630
Alignment:
| Q |
19 |
tcaccttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagcc |
118 |
Q |
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| T |
38869215 |
tcaccttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagcc |
38869314 |
T |
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| Q |
119 |
attataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgt |
218 |
Q |
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| T |
38869315 |
attataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgt |
38869414 |
T |
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| Q |
219 |
acttagcattcaaattcgttcttatcatttaaaatcacaatgcagaaacgtcattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaatg |
318 |
Q |
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| T |
38869415 |
acttagcattcaaattcgttcttatcatttaaaatcataatgcagaaacg-cattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaacg |
38869513 |
T |
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| Q |
319 |
agaagatagacaacattcaatggaaaataattttag-------aaagnnnnnnnnnngagagagaaaatactgaagttttggacgtcttccataatcttc |
411 |
Q |
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| T |
38869514 |
agaagatagacaacattcaatggaaaataattttagaaaaaaaaaaaaaaaaaaaaagagagagaaaatactgaagttttggacgtcttccataatcttc |
38869613 |
T |
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| Q |
412 |
ctgatgtccatctcatt |
428 |
Q |
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| T |
38869614 |
ctgatgtccatttcatt |
38869630 |
T |
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