View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6952_low_6 (Length: 366)
Name: NF6952_low_6
Description: NF6952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6952_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 355
Target Start/End: Complemental strand, 1842586 - 1842235
Alignment:
| Q |
4 |
gatggacatcaaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatat |
103 |
Q |
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| T |
1842586 |
gatgaacaacaaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatat |
1842487 |
T |
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| Q |
104 |
ctacattctcatcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacacn |
203 |
Q |
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| T |
1842486 |
ctacattctcatcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacaca |
1842387 |
T |
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| Q |
204 |
nnnnnngactaaaatttcatggtaaattcaaacttcatggtatatcaacggaagttttagtctttttaaatttaaattctacttattccttcttcaccac |
303 |
Q |
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| T |
1842386 |
aaaaaagactaaaatttcatggtaaattcaaacttcatggtatatcaacggaagttttagtctttttaaatttaaattctacttattccttcttcaccac |
1842287 |
T |
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| Q |
304 |
tttttctctctcaaaccgaaaccgaccatgacactaaaacaatcattgatgt |
355 |
Q |
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| T |
1842286 |
tttttctctctcaaaccgaaaccgaccatgacactaaaacaatcattgatgt |
1842235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 1841644 - 1841833
Alignment:
| Q |
13 |
caaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatatctacattct |
112 |
Q |
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| T |
1841644 |
caaaacaaacagttcacataaatgaatgtcatcacaacaaattaacaatacacaactgtatgatatacaaataaatacccaaactgtatatctacattct |
1841743 |
T |
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| Q |
113 |
catcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacac |
202 |
Q |
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| T |
1841744 |
catcaacatatttgctggtaaaatccaactcgatacgtttgaggaaagcggttggaatcttatctccagacttcttgacagcaaccacac |
1841833 |
T |
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