View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6953_high_1 (Length: 619)

Name: NF6953_high_1
Description: NF6953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6953_high_1
NF6953_high_1
[»] chr8 (12 HSPs)
chr8 (18-604)||(5626671-5627280)
chr8 (229-604)||(5608090-5608487)
chr8 (373-601)||(5549611-5549836)
chr8 (269-601)||(14404413-14404764)
chr8 (425-604)||(6310521-6310700)
chr8 (440-601)||(13164767-13164928)
chr8 (425-604)||(5571243-5571422)
chr8 (425-604)||(32633135-32633317)
chr8 (239-369)||(6310774-6310904)
chr8 (154-237)||(5574028-5574111)
chr8 (247-369)||(5571045-5571167)
chr8 (168-232)||(6310959-6311026)
[»] scaffold0363 (1 HSPs)
scaffold0363 (269-601)||(14089-14440)
[»] chr2 (1 HSPs)
chr2 (168-248)||(19493750-19493834)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 604
Target Start/End: Original strand, 5626671 - 5627280
Alignment:
Q  18 tcaagccaatgtacatggtctcatgatgcctatgccttcccagcgaaagagtctggcctcatctatatccatttctctagccatcctaagaatcatctgg 117  Q
    ||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||| || |||||||  || | |||| ||||||||||||||||||||||    
T  5626671 tcaagccaatgtagatggtctcatgttgcccatgccttcccatcgaaagagtctgcccacatctat--ccctctctcgagccatcctaagaatcatctgg 5626768  T
Q  118 gatggatcattgggacgttgaaagct----ctgtttatgattatgcccacatggtttacatttttaataattaatgttgatattttaatattgagaatta 213  Q
     ||||||||||||| |||| | ||||    || ||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  5626769 aatggatcattggggcgttaatagctagccctctttgtgattatgcccacgtgttttacatttttaataattaatgttgatattttaatattgagaatta 5626868  T
Q  214 tgttggttataattttggtatgataaaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacg 313  Q
    ||||| ||||| ||||||| |||||||||||||| ||||||||   || | |||||||||||||||||| |||||||||||||||||||||||||||||     
T  5626869 tgttgcttata-ttttggtgtgataaaaaatgttgatttaaga---cttagtgaacaagcccacttcgatacatgtgtattttgaacatgcatacaaaca 5626964  T
Q  314 taagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaattat--------------------gtttttacctctttggttggca 393  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| |                    |||||||||||||| |||||||    
T  5626965 taagtgatttgtgagaatatttgaatatcttgctagttttgcctaagattttaattttatgattcagatgaagaactggtttttacctctttagttggca 5627064  T
Q  394 ttcacatgatatattaactatta-ttatacaattttttgcacatgtcagg------actgaatccaacttaattgaagacattaccagagctgtaataag 486  Q
    ||||||||||||||  | ||  | |||||||||||||||||||||| |||      ||||||||||||||||||||||||||||||||||||||||||||    
T  5627065 ttcacatgatatat--attaacagttatacaattttttgcacatgttaggactcaaactgaatccaacttaattgaagacattaccagagctgtaataag 5627162  T
Q  487 aaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaa 586  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  5627163 aaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaaactattggagcgttcaatctttaataaaatttgactcaacagaa 5627262  T
Q  587 gttcaaatcattggactt 604  Q
    ||||||||||||||||||    
T  5627263 gttcaaatcattggactt 5627280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 229 - 604
Target Start/End: Complemental strand, 5608487 - 5608090
Alignment:
Q  229 tggtatgataaaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtg 328  Q
    |||| |||||||||||||| ||||||||   || | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |    
T  5608487 tggtgtgataaaaaatgttgatttaaga---cttagtgaacaagcccacttcgatacatgtgtattttgaacatgcatacaaacataagtgatttgtgag 5608391  T
Q  329 aatgtttgaatatcttgttagttttgcctaagattttaattat--------------------gtttttacctctttggttggcattcacatgatatatt 408  Q
    ||| ||||||||||||| ||||||||||||||||||||||| |                    |||||||||||||| |||||||||||||||||||||     
T  5608390 aatatttgaatatcttgctagttttgcctaagattttaattttatgattcagatgaagaactggtttttacctctttagttggcattcacatgatatat- 5608292  T
Q  409 aactatta-ttatacaattttttgcacatgtcaggact------gaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaaca 501  Q
     | ||  | |||||||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5608291 -attaacagttatacaattttttgcacatgttaggactcaaactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaaca 5608193  T
Q  502 aagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattgga 601  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  5608192 aagcacaattgatcttacttgtaatttcatacctgatgaaaactattggagcgttcaatctttaataaaatttgactcaacagaagttcaaatcattgga 5608093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 373 - 601
Target Start/End: Original strand, 5549611 - 5549836
Alignment:
Q  373 tttttacctctttggttggcattcacatgatatattaactattattatacaattttttgcacatgtcaggactgaatccaacttaattgaagacattacc 472  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| || ||||||||||||| | ||||||| ||||||||||    
T  5549611 tttttacctctttggttggcattcacatgatatattaactatt---atacaattttttgcacctgccaggactgaatccgaattaattggagacattacc 5549707  T
Q  473 agagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaat 572  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  5549708 ggagctgtattaagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaaactatcggagcattcaatctttaataaaat 5549807  T
Q  573 ttgactcaacagaagttcaaatcattgga 601  Q
    |||| ||||||||||||||||||||||||    
T  5549808 ttgattcaacagaagttcaaatcattgga 5549836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 269 - 601
Target Start/End: Original strand, 14404413 - 14404764
Alignment:
Q  269 caagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaat 368  Q
    |||||||| || || |||||| |||||||||||| |||||||||| ||||||||  | ||||||||||| ||||||||||||||||||||| ||||||||    
T  14404413 caagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat 14404512  T
Q  369 tat--------------------gtttttacctctttggttggcattcacatgatatattaact-attattatacaattttttgcacatgtcaggactga 447  Q
    | |                    ||| ||||||  ||||||||||||||||||||||||  ||| ||||||||| |||| |||||| |||||||||||||    
T  14404513 tttaagattcatatgaagttttggttcttacct--ttggttggcattcacatgatatatgtactaattattatataattgtttgcatatgtcaggactga 14404610  T
Q  448 atccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactat 547  Q
    |||  |||||||||||||||||||||||| |||| || ||||||||||||| ||| |||||| ||||||||| | |||||| |||| |||||||||||||    
T  14404611 atctgacttaattgaagacattaccagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatgaaaactat 14404710  T
Q  548 tggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattgga 601  Q
    ||||||||| |||| |||||||||||||| ||| || |||||||||||||||||    
T  14404711 tggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattgga 14404764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 425 - 604
Target Start/End: Complemental strand, 6310700 - 6310521
Alignment:
Q  425 ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttcta 524  Q
    |||||||||||||| |||||||||||  |  | ||||||| |||||| ||||||||| || ||||||||||||||||    |||| ||||||| | | ||    
T  6310700 ttttttgcacatgttaggactgaatctgaaatgattgaagccattactagagctgtattaggaaaattaaatcaacagtatacaaatgatcttccatgta 6310601  T
Q  525 atttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactt 604  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||| |||   |||||||||||||||||||||||||    
T  6310600 atttcatacttgatgaaaactattggagcattcaatctttaataaaatctgatctaacagaagttcaaatcattggactt 6310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 440 - 601
Target Start/End: Original strand, 13164767 - 13164928
Alignment:
Q  440 aggactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatg 539  Q
    |||||||||||  |||| ||||||||||||| ||||| |||| || ||||||||||||| |    | ||||||| ||||| | || ||||||||  ||||    
T  13164767 aggactgaatctgacttgattgaagacattatcagagttgtattaggaaaattaaatcaccggtacgcaattgaacttacatatagtttcatactcgatg 13164866  T
Q  540 aaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattgga 601  Q
    |||| || |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  13164867 aaaattactggagcattaaatctttaataaaaattgattcatcagaagttcaaatcattgga 13164928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 425 - 604
Target Start/End: Original strand, 5571243 - 5571422
Alignment:
Q  425 ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttcta 524  Q
    ||||||| | |||| ||||||||||| ||| | ||||||||||||||||||||| || || | ||||| ||||| ||   || |  ||| ||||| | ||    
T  5571243 ttttttgaatatgttaggactgaatctaacatgattgaagacattaccagagctttattagggaaattgaatcaccagtacagagatgaacttacatgta 5571342  T
Q  525 atttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactt 604  Q
    |||| |||| ||||||||||||||||  | ||  |||||||||||||||||| ||||||  |||||||||||||||||||    
T  5571343 atttgatacttgatgaaaactattgggccgttcgatctttaataaaatttgattcaacaacagttcaaatcattggactt 5571422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 425 - 604
Target Start/End: Original strand, 32633135 - 32633317
Alignment:
Q  425 ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttcta 524  Q
    |||||| || |||| |||||||||||  |||| ||||||||||||||||||| |||| | |||||||| |||||  |   ||||| ||| ||||| | ||    
T  32633135 ttttttacatatgttaggactgaatctgacttgattgaagacattaccagagttgtattgagaaaattgaatcacaagtacacaaatgagcttacgtgta 32633234  T
Q  525 atttcatacctgatgaaaactattggagcattaaatctttaat---aaaatttgactcaacagaagttcaaatcattggactt 604  Q
    |||||||||  |||||||||||| | | |||| | ||||||||   |||| |||| |||| ||||||||||||||||||||||    
T  32633235 atttcatactcgatgaaaactatcgcaccattcagtctttaataaaaaaaattgattcaatagaagttcaaatcattggactt 32633317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 369
Target Start/End: Complemental strand, 6310904 - 6310774
Alignment:
Q  239 aaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaa 338  Q
    ||||||||||||||||| | ||| || || |||||||| ||| | |||||| | || || | ||||||| ||| | || ||| ||||||||||||||||     
T  6310904 aaaaatgttaatttaagtacacttaaggatcaagcccaattcaatacatgtatgttctgtaaatgcatataaatgaaaatgaattgtgtgaatgtttgag 6310805  T
Q  339 tatcttgttagttttgcctaagattttaatt 369  Q
    ||| ||||||||||| ||||| |||||||||    
T  6310804 tattttgttagtttttcctaatattttaatt 6310774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 5574028 - 5574111
Alignment:
Q  154 ttatgcccacatggtttacatttttaataattaatgttgatattttaatattgagaattatgttggttataattttggtatgat 237  Q
    ||||| |||| || ||||||||||||||||||||  || | ||||| || || ||||||| |||||||||||||||||| ||||    
T  5574028 ttatggccacgtgttttacatttttaataattaacatttaaatttttattttaagaattaggttggttataattttggtctgat 5574111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 5571045 - 5571167
Alignment:
Q  247 taatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgt 346  Q
    ||||||||||||||| || || |||||||| ||| | | |||| |||||||||||| || |||||   |||| ||| |||||||||| ||| ||  || |    
T  5571045 taatttaagaagacttaaggatcaagcccaattcaatatatgtttattttgaacatacacacaaattaaagttattcgtgtgaatgtatgagtacttttt 5571144  T
Q  347 tagttttgcctaagattttaatt 369  Q
    ||||||| ||| | |||||||||    
T  5571145 tagtttttcctgatattttaatt 5571167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 6311026 - 6310959
Alignment:
Q  168 tttacatttttaataattaatgttgat---attttaatattgagaattatgttggttataattttggt 232  Q
    |||| ||||||||| ||||||||||||   ||||| ||||||||||||| || | |||||||||||||    
T  6311026 tttatatttttaatcattaatgttgatgatatttttatattgagaattacgtcgattataattttggt 6310959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 269 - 601
Target Start/End: Complemental strand, 14440 - 14089
Alignment:
Q  269 caagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaat 368  Q
    |||||||| || || |||||| |||||||||||| |||||||||| ||||||||  | ||||||||||| ||||||||||||||||||||| ||||||||    
T  14440 caagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat 14341  T
Q  369 tat--------------------gtttttacctctttggttggcattcacatgatatattaact-attattatacaattttttgcacatgtcaggactga 447  Q
    | |                    ||| ||||||  ||||||||||||||||||||||||  ||| ||||||||| |||| |||||| |||||||||||||    
T  14340 tttaagattcatatgaagttttggttcttacct--ttggttggcattcacatgatatatgtactaattattatataattgtttgcatatgtcaggactga 14243  T
Q  448 atccaacttaattgaagacattaccagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactat 547  Q
    |||  |||||||||||||||||||||||| |||| || ||||||||||||| ||| |||||| ||||||||| | |||||| |||| |||||||||||||    
T  14242 atctgacttaattgaagacattaccagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatgaaaactat 14143  T
Q  548 tggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattgga 601  Q
    ||||||||| |||| |||||||||||||| ||| || |||||||||||||||||    
T  14142 tggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattgga 14089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 19493834 - 19493750
Alignment:
Q  168 tttacatttttaataattaatgttgatattttaatattgagaat---tatgttggttataattttggtatga-taaaaaatgtta 248  Q
    |||||||||||||| ||||||||||||||||| ||| | |||||   ||| | ||||||||||||| | ||| ||||||||||||    
T  19493834 tttacatttttaatcattaatgttgatatttttataataagaattcatatttgggttataattttgttttgattaaaaaatgtta 19493750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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