View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6953_high_2 (Length: 406)
Name: NF6953_high_2
Description: NF6953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6953_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 34033737 - 34033364
Alignment:
| Q |
15 |
gatgaagcaattgcatgggccaaagagaagtttcaatcaagaagccctgatgaaaagtcaagaatgagatatgatggcaatgaacagacttttaaaatgc |
114 |
Q |
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| T |
34033737 |
gatgaagcaattgcatgggccaaagagaagtttcaatcaagaagccctgatgaaaagtcaagaatgagatatgatggcaatgaacagactgttaaaatgc |
34033638 |
T |
|
| Q |
115 |
aaggtgattgattatcttaactgatagtaaaaaattaagaagcactcacacaaacactgaacacaacactaatacagacacatagatactcgtaatagtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033637 |
aaggtgattgattatcttaactgatagtaaaaaattaagaagcactcacacaaacactgaacacaacactaatacagacacatagatactcgtaatagtt |
34033538 |
T |
|
| Q |
215 |
taagaaaatgaaaatcaattaatgtaatgtaactgcttgtgtcagtgtcaaatacgggacacaccttcgatctgaagtgttgatgctacacagataaaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033537 |
taagaaaatgaaaatcaattaatgtaatgtaactgcttgtgtcagtgtcaaatacgggacacaccttcgatctgaagtgttgatgctacacagataaaaa |
34033438 |
T |
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| Q |
315 |
ttctcaaaggttaacaaattttgttgacagaaagagacaaaagcaagctacctcatgtttttatctcatgtttgt |
389 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033437 |
ttctcaaaggttaacaaattttgttgac-gaaagagacaaaagcaagctacctcatgtttttatctcatgtttgt |
34033364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 22360928 - 22360965
Alignment:
| Q |
15 |
gatgaagcaattgcatgggccaaagagaagtttcaatc |
52 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
22360928 |
gatgaagcgattgcatgggccaaagagaagtttcaatc |
22360965 |
T |
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