View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6953_low_3 (Length: 388)

Name: NF6953_low_3
Description: NF6953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6953_low_3
NF6953_low_3
[»] chr3 (22 HSPs)
chr3 (1-381)||(47889546-47889919)
chr3 (237-292)||(3178754-3178809)
chr3 (238-292)||(8950526-8950580)
chr3 (238-292)||(13856151-13856205)
chr3 (191-293)||(20382524-20382626)
chr3 (238-292)||(21853249-21853303)
chr3 (238-292)||(23467516-23467570)
chr3 (238-292)||(40845939-40845993)
chr3 (192-293)||(43347357-43347457)
chr3 (238-292)||(5391509-5391563)
chr3 (236-293)||(1781812-1781869)
chr3 (238-290)||(32352899-32352951)
chr3 (238-293)||(36539684-36539739)
chr3 (238-292)||(44994990-44995045)
chr3 (236-293)||(19649393-19649450)
chr3 (236-291)||(54546954-54547009)
chr3 (236-293)||(10839401-10839458)
chr3 (236-293)||(8926816-8926873)
chr3 (249-293)||(27642723-27642767)
chr3 (236-278)||(22845398-22845440)
chr3 (199-293)||(48206868-48206960)
chr3 (238-278)||(791866-791906)
[»] chr5 (20 HSPs)
chr5 (138-293)||(10081096-10081252)
chr5 (197-293)||(8456984-8457079)
chr5 (191-293)||(11856300-11856402)
chr5 (238-292)||(23218537-23218591)
chr5 (238-292)||(37169055-37169109)
chr5 (238-292)||(38397650-38397704)
chr5 (236-289)||(9738008-9738061)
chr5 (236-292)||(39862509-39862565)
chr5 (238-292)||(6257432-6257486)
chr5 (191-293)||(614413-614515)
chr5 (238-292)||(16618592-16618646)
chr5 (238-290)||(15631665-15631718)
chr5 (236-293)||(42119672-42119729)
chr5 (237-293)||(29790240-29790296)
chr5 (197-293)||(25560348-25560443)
chr5 (236-293)||(27916190-27916247)
chr5 (236-293)||(36769095-36769152)
chr5 (238-293)||(33271291-33271346)
chr5 (236-278)||(19322058-19322100)
chr5 (236-293)||(10115210-10115267)
[»] chr2 (15 HSPs)
chr2 (236-293)||(6318479-6318536)
chr2 (238-293)||(40277309-40277364)
chr2 (238-292)||(14186460-14186514)
chr2 (238-292)||(14942066-14942120)
chr2 (238-292)||(42769780-42769834)
chr2 (238-292)||(19181600-19181654)
chr2 (238-292)||(29846494-29846548)
chr2 (236-290)||(1387312-1387366)
chr2 (137-293)||(3956522-3956679)
chr2 (236-290)||(33009723-33009777)
chr2 (236-293)||(14539725-14539782)
chr2 (236-278)||(43139797-43139839)
chr2 (236-293)||(41674727-41674784)
chr2 (236-293)||(2888091-2888148)
chr2 (238-278)||(3597903-3597943)
[»] chr6 (12 HSPs)
chr6 (238-292)||(14309820-14309874)
chr6 (238-292)||(1727955-1728009)
chr6 (238-292)||(9231876-9231930)
chr6 (238-292)||(13627592-13627646)
chr6 (238-292)||(24694673-24694727)
chr6 (191-293)||(13103139-13103241)
chr6 (238-293)||(28750671-28750726)
chr6 (242-292)||(24497596-24497646)
chr6 (236-293)||(34103735-34103792)
chr6 (236-280)||(11212721-11212765)
chr6 (237-278)||(8412717-8412758)
chr6 (236-293)||(27863749-27863806)
[»] chr4 (25 HSPs)
chr4 (238-292)||(52632570-52632624)
chr4 (238-292)||(1535823-1535877)
chr4 (238-292)||(36012207-36012261)
chr4 (238-292)||(49284409-49284463)
chr4 (197-293)||(17888571-17888666)
chr4 (238-292)||(34241045-34241099)
chr4 (238-292)||(46583563-46583617)
chr4 (236-293)||(31377440-31377497)
chr4 (237-293)||(11054507-11054563)
chr4 (238-292)||(16338235-16338289)
chr4 (238-292)||(25954802-25954856)
chr4 (236-293)||(9742554-9742611)
chr4 (236-292)||(20818617-20818673)
chr4 (238-292)||(37801286-37801340)
chr4 (236-293)||(12792252-12792309)
chr4 (236-293)||(47084062-47084119)
chr4 (238-278)||(5780790-5780830)
chr4 (238-279)||(322584-322625)
chr4 (236-293)||(10094414-10094471)
chr4 (236-292)||(54090230-54090286)
chr4 (238-284)||(35018988-35019034)
chr4 (238-292)||(50328848-50328902)
chr4 (255-292)||(36851409-36851446)
chr4 (236-293)||(46474044-46474101)
chr4 (137-165)||(17888700-17888728)
[»] chr8 (14 HSPs)
chr8 (236-293)||(16523156-16523213)
chr8 (238-292)||(22324648-22324702)
chr8 (238-292)||(21525410-21525464)
chr8 (238-292)||(26021448-26021502)
chr8 (238-292)||(35806846-35806900)
chr8 (238-292)||(42013924-42013978)
chr8 (238-292)||(42072480-42072534)
chr8 (238-292)||(33934391-33934445)
chr8 (237-290)||(24065324-24065377)
chr8 (240-293)||(16591396-16591449)
chr8 (236-293)||(43282872-43282929)
chr8 (236-292)||(21488116-21488172)
chr8 (241-280)||(16819007-16819046)
chr8 (236-280)||(2271245-2271289)
[»] chr7 (15 HSPs)
chr7 (238-292)||(10576725-10576779)
chr7 (238-292)||(34259570-34259624)
chr7 (238-292)||(34707168-34707222)
chr7 (236-293)||(19334581-19334638)
chr7 (191-293)||(33057678-33057779)
chr7 (238-292)||(24320461-24320515)
chr7 (238-292)||(29555961-29556015)
chr7 (238-292)||(32876552-32876606)
chr7 (238-292)||(44164765-44164819)
chr7 (236-293)||(17303135-17303192)
chr7 (238-292)||(29238165-29238219)
chr7 (238-292)||(29981135-29981189)
chr7 (236-293)||(10334228-10334285)
chr7 (236-293)||(15017823-15017880)
chr7 (236-280)||(9770709-9770753)
[»] chr1 (19 HSPs)
chr1 (238-292)||(29149570-29149624)
chr1 (242-292)||(48392428-48392478)
chr1 (197-293)||(38859863-38859958)
chr1 (238-293)||(42456624-42456679)
chr1 (238-292)||(3346838-3346892)
chr1 (238-292)||(7742801-7742855)
chr1 (238-292)||(23908337-23908391)
chr1 (238-292)||(49902520-49902574)
chr1 (238-292)||(5975040-5975094)
chr1 (198-293)||(30745357-30745451)
chr1 (198-293)||(30766808-30766902)
chr1 (243-293)||(37189697-37189747)
chr1 (238-292)||(47022754-47022808)
chr1 (238-292)||(42517316-42517374)
chr1 (236-279)||(5558359-5558402)
chr1 (238-292)||(10156038-10156092)
chr1 (236-293)||(10907669-10907726)
chr1 (237-293)||(13131947-13132003)
chr1 (197-293)||(26835350-26835445)
[»] scaffold0079 (1 HSPs)
scaffold0079 (238-292)||(54571-54625)
[»] scaffold0045 (1 HSPs)
scaffold0045 (188-293)||(34473-34578)
[»] scaffold0086 (1 HSPs)
scaffold0086 (236-293)||(20852-20909)
[»] scaffold0016 (1 HSPs)
scaffold0016 (238-278)||(85552-85592)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 47889546 - 47889919
Alignment:
Q  1 aaacactatggtataatgagagacatcaaaatagggagaacaaagaatatggggttccatggttttcaacggattgtggttaagagggaagaaaccgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47889546 aaacactatggtataatgagagacatcaaaatagggagaacaaagaatatggggttccatggttttcaacggattgtggttaagagggaagaaaccgaaa 47889645  T
Q  101 cgtttttgtgtattaaattttcttgtacgctcacattcagtggcggagccaggattattgtaaagtacgggcnnnnnnnnnttgcgaacgtttatagggt 200  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||| |||||||||||||||||||         |||| ||||||||||||||    
T  47889646 cgtttttgtgtattaaattttcttgtacg-----attcagtggcggagccagaattattgtaaagtacgggcaaaaaaatattgcaaacgtttatagggt 47889740  T
Q  201 ttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacatnnnnnnn 300  Q
    ||||||||||||||||||||||||||||       | |||||||||||||||||||||||| |||||||||||||||||||||| |   | |            
T  47889741 ttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcataggaa--aaaaaaataaaa 47889838  T
Q  301 nnnttgggtgagtacccgaggtcgccaggccatagaaccgtccatgctcacattactctttattctaatttcttcatttca 381  Q
       ||||  ||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  47889839 aaattggacgagtatccggggtcaccaggccatagaaccgtccatgctcacattgctctttattctaatttcttcgtttca 47889919  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 3178754 - 3178809
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3178754 ctaaagaaattgcccaatttatagagatttatataagaaattcatagggatttaca 3178809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 8950580 - 8950526
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8950580 taaagaaattgcccaatttatagggatttatataagaaattcataggaatttaca 8950526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 13856151 - 13856205
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13856151 taaagaaattgtccaatttatagggatttatataagaaattcatagggatttaca 13856205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 20382524 - 20382626
Alignment:
Q  191 tttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggattt 289  Q
    |||||||| |||||||| |||||||| |||| |||||||       |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  20382524 tttataggagtttacataagaaattg-caagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattcatagggattt 20382622  T
Q  290 acat 293  Q
    ||||    
T  20382623 acat 20382626  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 21853249 - 21853303
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21853249 taaagaaattgcccaatttatagggttttatataagaaattcatagggatttaca 21853303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 23467570 - 23467516
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23467570 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 23467516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 40845993 - 40845939
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40845993 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 40845939  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 43347457 - 43347357
Alignment:
Q  192 ttatagggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttac 291  Q
    ||||||||||||||| |||||||| |||| |||||||       ||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||    
T  43347457 ttatagggtttacataagaaattg-caagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttac 43347359  T
Q  292 at 293  Q
    ||    
T  43347358 at 43347357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 5391509 - 5391563
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  5391509 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 5391563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 1781812 - 1781869
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  1781812 tctaaagaaattgcccaatttattggggtttatataagaaattcagagggatttacat 1781869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 32352899 - 32352951
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggattta 290  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  32352899 taaagaaattgcctaatttataggggtttatataagaaattcatagggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 36539684 - 36539739
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  36539684 taaagaaattgcccaatttataggggattatataagaaatttatagggatttacat 36539739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 44995045 - 44994990
Alignment:
Q  238 taaagaaattgcccaatttata-gggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  44995045 taaagaaattgcccaatttataaggggtttatataagaaattcatagggatttaca 44994990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 19649450 - 19649393
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||| |||||||||    
T  19649450 tctaaagaaattgtccaatttataagggtttatataagaaattcatagcgatttacat 19649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 54546954 - 54547009
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttac 291  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||    
T  54546954 tctaaagaaattgtccaatttataggggtttatataagaaattcaaaggaatttac 54547009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 10839458 - 10839401
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||  ||||||||    
T  10839458 tctaaagaaattgcccaatttatagaggtttatataagaaattcagagaaatttacat 10839401  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 8926816 - 8926873
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||    
T  8926816 tctacagaaattgccaaatttataggggtttatatcagaaattcagaggaatttacat 8926873  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 27642723 - 27642767
Alignment:
Q  249 cccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||    
T  27642723 cccaatttataaggatttatataagaaattcaaaaggatttacat 27642767  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 22845440 - 22845398
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    ||||||||||||| | ||||||||||| |||||||||||||||    
T  22845440 tctaaagaaattgtcaaatttataggggtttatataagaaatt 22845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 48206868 - 48206960
Alignment:
Q  199 gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||| |||||||| ||||||||||||       |||||| |||||| | ||||||||||| |||||||||| |||||| ||| ||||||||    
T  48206868 gtttacataagaaattg-caagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattcagaggaatttacat 48206960  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 791866 - 791906
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  791866 taaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 293
Target Start/End: Original strand, 10081096 - 10081252
Alignment:
Q  138 cagtggcggagccaggattattgtaaagtacgggcnnnnnnnnnttgcga-acgtttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnn 235  Q
    ||||||||||||||||||||||||||||  |||||         |||| | || |||||||| |||||||| ||||||||| ||| |||||||           
T  10081096 cagtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggagtttacataagaaattgt-aagcaaataataaaaaaa 10081194  T
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10081195 tctaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacat 10081252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 8457079 - 8456984
Alignment:
Q  197 gggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||| |||||||| |||| |||||||       |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8457079 gggtttacataagaaattg-caagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcatagggatttacat 8456984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 11856300 - 11856402
Alignment:
Q  191 tttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggattt 289  Q
    |||||||| |||||||| |||||||| ||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  11856300 tttataggagtttacataagaaattg-caagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattcagagcgattt 11856398  T
Q  290 acat 293  Q
    ||||    
T  11856399 acat 11856402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 23218537 - 23218591
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23218537 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 23218591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 37169109 - 37169055
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37169109 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 37169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 38397650 - 38397704
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38397650 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 38397704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 9738061 - 9738008
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggattt 289  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9738061 tctaaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 39862565 - 39862509
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  39862565 tctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttaca 39862509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 6257486 - 6257432
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  6257486 taaagaaattgcccaatttataggggtttgtataagaaattcatagggatttaca 6257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 614515 - 614413
Alignment:
Q  191 tttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggattt 289  Q
    |||||||| |||||||| |||||||| |||| |||||||       ||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||    
T  614515 tttataggtgtttacataagaaattg-caagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagaggaattt 614417  T
Q  290 acat 293  Q
    ||||    
T  614416 acat 614413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 16618646 - 16618592
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||| |||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  16618646 taaaaaaattgtccaatttataggagtttatataagaaattcatagggatttaca 16618592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 15631665 - 15631718
Alignment:
Q  238 taaagaaattgcccaatttataggga-tttatataagaaattcatagggattta 290  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  15631665 taaagaaattgtccaatttatagggggtttatataagaaattcatagggattta 15631718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 42119672 - 42119729
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||| ||| ||||||||    
T  42119672 tctaaagaaattgtccaatttatagaggtttatataagaaattcagaggaatttacat 42119729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 29790296 - 29790240
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||||||||||||||  | ||||||||||||||||||| | ||||||||    
T  29790296 ctaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacat 29790240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 25560443 - 25560348
Alignment:
Q  197 gggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||| |||||||| |||| |||||||       ||||||||||||| |||||||||||   ||||||||||||||| ||| ||||||||||    
T  25560443 gggtttacataagaaattg-caagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaatttataaggatttacat 25560348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 27916190 - 27916247
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||| ||| ||||||||    
T  27916190 tctaatgaaattgctcaatttataggagtttatataagaaattcagaggaatttacat 27916247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 36769152 - 36769095
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||| |||| |||| | ||||||||||||||||| ||| ||||||||    
T  36769152 tctaaagaaattgcctaattcatagaggtttatataagaaattcagaggaatttacat 36769095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 33271346 - 33271291
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||| ||||||||||| | |||||||||||||||||  || ||||||||    
T  33271346 taaagaaattgtccaatttatagaggtttatataagaaattcaacggaatttacat 33271291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 19322100 - 19322058
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    ||||||| ||||||||||||||||||  |||||||||||||||    
T  19322100 tctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 10115210 - 10115267
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| | ||||||| ||| |||||||||||||| || ||| ||||||||    
T  10115210 tctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacat 10115267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 6318536 - 6318479
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6318536 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 6318479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 40277364 - 40277309
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40277364 taaagaaattgcccaatttatagggatttatataagaaatttatagggatttacat 40277309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 14186514 - 14186460
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14186514 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 14186460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 14942120 - 14942066
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14942120 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 14942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 42769834 - 42769780
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42769834 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 42769780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 19181600 - 19181654
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  19181600 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttaca 19181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 29846494 - 29846548
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  29846494 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 29846548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 1387366 - 1387312
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggattta 290  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  1387366 tctaaagaaattacccaatttataggggtttatctaagaaattcatagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 3956522 - 3956679
Alignment:
Q  137 tcagtggcggagccaggattattgtaaagtacgggcnnnnnnnnnttgcga-acgtttatag-ggtttacattagaaattgtcaagtaaataatnnnnnn 234  Q
    |||||||||||||||||||||||||||||  |||||         |||| | || ||||||| |||||||||| ||||||| |||| |||||||          
T  3956522 tcagtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagaggtttacatttgaaattg-caagcaaataataaaaaa 3956620  T
Q  235 ntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
     | ||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  3956621 ttttaaagaaattgtccaatttacaggggtttatataataaattcatagggatttacat 3956679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 33009723 - 33009777
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggattta 290  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  33009723 tctaaagaaattgtccaatttataaggatttatataacaaattcatagggattta 33009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 14539782 - 14539725
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||| | ||||||    
T  14539782 tctaaagaaattgcctaatttataggaatttatataagaaattcagaggaaattacat 14539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 43139797 - 43139839
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  43139797 tctaaagaaattgctcaatttataggggtttatataagaaatt 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 41674784 - 41674727
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| |||||||||| || ||||||||| ||||||| || |||||||||    
T  41674784 tctaaagaaattgtccaatttataagggtttatataaaaaattcagagagatttacat 41674727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 2888091 - 2888148
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||| ||||||  |||||||||||  ||||||||| |||||||||| |||||||||    
T  2888091 tctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacat 2888148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 3597943 - 3597903
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    ||||||||||| |||||||||||||||||| | ||||||||    
T  3597943 taaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 14309874 - 14309820
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309874 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 14309820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 1728009 - 1727955
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  1728009 taaagaaattgctcaatttataggggtttatataagaaattcatagggatttaca 1727955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 9231930 - 9231876
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  9231930 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttaca 9231876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 13627592 - 13627646
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  13627592 taaagaaattgctcaatttataggggtttatataagaaattcatagggatttaca 13627646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 24694727 - 24694673
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  24694727 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttaca 24694673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 13103241 - 13103139
Alignment:
Q  191 tttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggattt 289  Q
    |||||||| ||||||||||||||||| |||| |||||||       ||||||||||||||||||||||||  | ||||||||||||||||| ||| ||||    
T  13103241 tttataggtgtttacattagaaattg-caagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaattt 13103143  T
Q  290 acat 293  Q
    ||||    
T  13103142 acat 13103139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 28750726 - 28750671
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  28750726 taaagaaattgcccaatttataggggtttatataagaaattcagaagaatttacat 28750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 24497646 - 24497596
Alignment:
Q  242 gaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttaca 24497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 34103735 - 34103792
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||| ||||||||||| || ||||||||||||||||| ||| ||||||||    
T  34103735 tctaaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacat 34103792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 11212721 - 11212765
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattca 280  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  11212721 tctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 8412758 - 8412717
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  8412758 ctaaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 27863749 - 27863806
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| |||||||||| || ||||||||||||||||| ||  ||||||||    
T  27863749 tctaaagaaattgtccaatttataagggtttatataagaaattcagagaaatttacat 27863806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 52632570 - 52632624
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 52632624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 1535823 - 1535877
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1535823 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 1535877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 36012261 - 36012207
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36012261 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 36012207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 49284409 - 49284463
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49284409 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 49284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 17888666 - 17888571
Alignment:
Q  197 gggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||| |||||||| |||| |||||||       |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  17888666 gggtttacataagaaattg-caagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcataggaatttacat 17888571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 34241045 - 34241099
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  34241045 taaagaaattgcccaatttataggggtttatataagaaattcatagggatctaca 34241099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 46583617 - 46583563
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  46583617 taaagaaattgcctaatttataggggtttatataagaaattcatagggatttaca 46583563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 31377440 - 31377497
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  31377440 tctaaagaaattgcccaatttatagagggttatataagaaattcatagggatttacat 31377497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 11054507 - 11054563
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  11054507 ctaaagagattgcccaatttatagaggtttatataagaaattcatagggatttacat 11054563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 16338289 - 16338235
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  16338289 taaagaaattgtccaatttatagggatttatataaaaaattcataggaatttaca 16338235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 25954802 - 25954856
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  25954802 taaagaaattgcccaatttataggagtttatataagaaattcataggaatttaca 25954856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 9742611 - 9742554
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||    
T  9742611 tctaaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacat 9742554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 20818617 - 20818673
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||| |||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  20818617 tctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttaca 20818673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 37801340 - 37801286
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||    
T  37801340 taaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttaca 37801286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 12792309 - 12792252
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||  ||||||||    
T  12792309 tctaaagtaattgcccaatttataggggtttatataagaaattcagagaaatttacat 12792252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 47084062 - 47084119
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||  ||||||||    
T  47084062 tctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacat 47084119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 5780830 - 5780790
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  5780830 taaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 322625 - 322584
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattc 279  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  322625 taaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 10094471 - 10094414
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||| ||  ||||||||    
T  10094471 tctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacat 10094414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 54090230 - 54090286
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||| ||||||||||||||||| |  ||||||||| ||||||| |||||||||||    
T  54090230 tctaaaaaaattgcccaatttataagagtttatataataaattcagagggatttaca 54090286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 35018988 - 35019034
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagg 284  Q
    |||||||||| || |||||||| || |||||||||||||||||||||    
T  35018988 taaagaaattacctaatttataagggtttatataagaaattcatagg 35019034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 50328848 - 50328902
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||| | ||||||||||||||| | ||| |||||||    
T  50328848 taaagaaattgtccaatttatagaggtttatataagaaattaagaggaatttaca 50328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 36851446 - 36851409
Alignment:
Q  255 ttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttaca 36851409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 46474044 - 46474101
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||||  ||||||||| || ||||||||| ||||||| ||| ||||||||    
T  46474044 tctaaagaaattgtacaatttatatgggtttatataaaaaattcacaggaatttacat 46474101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 17888728 - 17888700
Alignment:
Q  137 tcagtggcggagccaggattattgtaaag 165  Q
    |||||||||||||||||||||||||||||    
T  17888728 tcagtggcggagccaggattattgtaaag 17888700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 16523156 - 16523213
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16523156 tctaaagaagttgcccaatttatagggatttatataagaaattcatagggatttacat 16523213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 22324648 - 22324702
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22324648 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 22324702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 21525410 - 21525464
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 21525464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 26021448 - 26021502
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  26021448 taaagaaattacccaatttataggggtttatataagaaattcatagggatttaca 26021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 35806846 - 35806900
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  35806846 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttaca 35806900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 42013924 - 42013978
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  42013924 taaagaaattgcccaatttataggagtttatataagaaattcatagggatttaca 42013978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 42072480 - 42072534
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  42072480 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 42072534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 33934445 - 33934391
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  33934445 taaaaaaattgcccaatttataggggtttatataagaaattcataggaatttaca 33934391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 24065324 - 24065377
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggattta 290  Q
    |||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  24065324 ctaaagaaattgcccaatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 16591449 - 16591396
Alignment:
Q  240 aagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||| |||||||||||||||||| |||  ||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacat 16591396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 43282929 - 43282872
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||| | | ||||||||    
T  43282929 tctaatgaaattacccaatttatagggatttatataataaattcagaagaatttacat 43282872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 21488116 - 21488172
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||| ||||||||| ||| ||| ||||||||||||| ||| |||||||    
T  21488116 tctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttaca 21488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 16819046 - 16819007
Alignment:
Q  241 agaaattgcccaatttatagggatttatataagaaattca 280  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  16819046 agaaattacccaatttataggggtttatataagaaattca 16819007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 2271245 - 2271289
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattca 280  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||    
T  2271245 tctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 10576725 - 10576779
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10576725 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 10576779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 34259570 - 34259624
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34259570 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 34259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 34707168 - 34707222
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34707168 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 34707222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 19334638 - 19334581
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  19334638 tctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacat 19334581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 33057779 - 33057678
Alignment:
Q  191 tttatagggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggattta 290  Q
    |||||||| ||||||| |||||||| |||| |||||||       |||||||||||||  ||||||||||||  ||||||||||||||||||||||||||    
T  33057779 tttataggatttacataagaaattg-caagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcatagggattta 33057681  T
Q  291 cat 293  Q
    |||    
T  33057680 cat 33057678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 24320515 - 24320461
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  24320515 taaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttaca 24320461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 29556015 - 29555961
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  29556015 taaagaaattgtccaatttataggggtttatataagaaattcataggaatttaca 29555961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 32876606 - 32876552
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattcatagggatctaca 32876552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 44164819 - 44164765
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  44164819 taaagaaattgcccaatttataggggtttatataagaaattcatagaaatttaca 44164765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 17303192 - 17303135
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||    
T  17303192 tctaaagaaattgcccaatttacaagggtttatataagaaattcataggaatttacat 17303135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 29238219 - 29238165
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||    
T  29238219 taaagaaattttccaatttttaggggtttatataagaaattcatagggatttaca 29238165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 29981189 - 29981135
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| |||||||||||   |||||||||||||||||||||||||||||    
T  29981189 taaagaaattgtccaatttatagaagtttatataagaaattcatagggatttaca 29981135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 10334228 - 10334285
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||||||||||||||| |  ||||||||||||||||| ||| ||||||||    
T  10334228 tctaaagaaattgcccaatttataagagtttatataagaaattcagaggaatttacat 10334285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 15017823 - 15017880
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| |||||||||| |  ||||||||||||||||| ||| ||||||||    
T  15017823 tctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacat 15017880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 9770709 - 9770753
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattca 280  Q
    ||||||||||||| |||||| |||| | |||||||||||||||||    
T  9770709 tctaaagaaattgtccaattcatagtggtttatataagaaattca 9770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 29149624 - 29149570
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29149624 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 29149570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 48392478 - 48392428
Alignment:
Q  242 gaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392478 gaaattgcccaatttatagggatttatataagaaattcatagggatttaca 48392428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 38859863 - 38859958
Alignment:
Q  197 gggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||| |||||||| |||| |||||||       |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  38859863 gggtttacataagaaattg-caagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcataggaatttacat 38859958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 42456624 - 42456679
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  42456624 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttacat 42456679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 3346838 - 3346892
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  3346838 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 3346892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 7742855 - 7742801
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  7742855 taaagaaattgcccaatttataggggtttatataagaaattcataaggatttaca 7742801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 23908337 - 23908391
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23908337 taaagaaattgtccaatttatagggatttatataagaaattcataggaatttaca 23908391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 49902520 - 49902574
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  49902520 taaagaaattgccctatttataggggtttatataagaaattcatagggatttaca 49902574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 5975040 - 5975094
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  5975040 taaagaaattgcctaatttataggggtttatataagaaattcttagggatttaca 5975094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 30745357 - 30745451
Alignment:
Q  198 ggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||| |||||||| ||||||||||||       | ||||||||||| |||||||||||||||||||| |||||||||| ||  ||||||||    
T  30745357 ggtttacataagaaattg-caagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacat 30745451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 30766808 - 30766902
Alignment:
Q  198 ggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||| |||||||| ||||||||||||       | ||||||||||| |||||||||||||||||||| |||||||||| ||  ||||||||    
T  30766808 ggtttacataagaaattg-caagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacat 30766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 37189697 - 37189747
Alignment:
Q  243 aaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacat 37189747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 47022754 - 47022808
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||    
T  47022754 taaagaaattgcctaatttataggagtttatataagaaattcatagagatttaca 47022808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 42517374 - 42517316
Alignment:
Q  238 taaagaaattgcccaatttataggg----atttatataagaaattcatagggatttaca 292  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  42517374 taaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttaca 42517316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 5558359 - 5558402
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattc 279  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  5558359 tctaaagaaattgtccaatttataggggtttatataagaaattc 5558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 10156092 - 10156038
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| |||||||||||   ||||||||||||||||||||| |||||||    
T  10156092 taaagaaattgtccaatttatagaagtttatataagaaattcataggaatttaca 10156038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 10907726 - 10907669
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    ||||||||||||| |  |||||||||| ||||||||||||||||| ||| ||||||||    
T  10907726 tctaaagaaattgtctgatttataggggtttatataagaaattcagaggaatttacat 10907669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 13131947 - 13132003
Alignment:
Q  237 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| | ||| ||||||||    
T  13131947 ctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacat 13132003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 26835350 - 26835445
Alignment:
Q  197 gggtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||||||| |||||||| |||| |||||||       |||||| ||||||  |||||||||||  ||||||||||||||||||| | ||||||||    
T  26835350 gggtttacatgagaaattg-caagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattcatatgaatttacat 26835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 54571 - 54625
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaattcatagggatttaca 292  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  54571 taaagaaattgtccaatttatagggatttatataaaaaattcataggaatttaca 54625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 34578 - 34473
Alignment:
Q  188 acgtttatagg-gtttacattagaaattgtcaagtaaataatnnnnnnntctaaagaaattgcccaatttatagggatttatataagaaattcataggga 286  Q
    ||||||||||| |||||||| ||||||||| ||| |||||||       |||||||||| || ||||||||||| |||||||||||  |||||| |||||    
T  34578 acgtttataggagtttacataagaaattgt-aagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagaggga 34480  T
Q  287 tttacat 293  Q
    |||||||    
T  34479 tttacat 34473  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 20909 - 20852
Alignment:
Q  236 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 293  Q
    |||||| |||||| ||||||||||| | ||||||||||||||||| ||| ||||||||    
T  20909 tctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacat 20852  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 85552 - 85592
Alignment:
Q  238 taaagaaattgcccaatttatagggatttatataagaaatt 278  Q
    ||||||||||| ||||||||||||||||| ||||| |||||    
T  85552 taaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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