View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6953_low_4 (Length: 359)
Name: NF6953_low_4
Description: NF6953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6953_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 138 - 353
Target Start/End: Original strand, 34033852 - 34034067
Alignment:
| Q |
138 |
ctgttctgtaatttgttctgaaagcacatgatcataaactgaacatttagactcagatggggaatttagctcacagtcatcggcaaatactttggcgcct |
237 |
Q |
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| T |
34033852 |
ctgttctgtaatttgttctgaaagcacatgatcataaactgaacatttagactcagatggggaatttagctcacagtcatcggcaaatactttggcgcct |
34033951 |
T |
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| Q |
238 |
tgatatgaatcagatccgagactagtagttgccggggatgagactaattttgagaatccttgaggagagcttttgaagtttgtcttgtattcattatcct |
337 |
Q |
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| T |
34033952 |
tgatatgaatcagatccaagactagtagttgccggggatgagactaattttgagaatccttgaggagagcttttgaagtttgtcttgtattcattatcct |
34034051 |
T |
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| Q |
338 |
cgtgttgaactccaaa |
353 |
Q |
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| T |
34034052 |
cgtgttgaactccaaa |
34034067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34033734 - 34033799
Alignment:
| Q |
20 |
catcgatgtctgacgcttcacaatcttcccttctgaggctggagttaatttctatgacataagagc |
85 |
Q |
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| T |
34033734 |
catcgatgtctgacgcttcacaatcttcccttctgaggctggagttaatttctatgacataagagc |
34033799 |
T |
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