View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6953_low_5 (Length: 250)

Name: NF6953_low_5
Description: NF6953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6953_low_5
NF6953_low_5
[»] chr4 (5 HSPs)
chr4 (18-250)||(43440529-43440761)
chr4 (98-245)||(43434742-43434889)
chr4 (111-250)||(43426250-43426389)
chr4 (27-91)||(43426145-43426209)
chr4 (33-91)||(43434665-43434723)
[»] scaffold0252 (1 HSPs)
scaffold0252 (109-245)||(20251-20387)
[»] chr3 (1 HSPs)
chr3 (211-250)||(41930402-41930441)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 43440529 - 43440761
Alignment:
Q  18 acaaatccctccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactcgctactccgaaccaggt 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  43440529 acaaatccctccaagcttttacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactctctactccgaatcaggt 43440628  T
Q  118 tactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgtttttcttca 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43440629 tactcacttctcttctttcactttttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgtttttcttca 43440728  T
Q  218 aaacccaacatgattttagagcgtgtttacacc 250  Q
    |||||||||||||||||||||||||||||||||    
T  43440729 aaacccaacatgattttagagcgtgtttacacc 43440761  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 43434742 - 43434889
Alignment:
Q  98 ctcgctactccgaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatc 197  Q
    ||||| |||| |||||||||| ||||||| ||||||| | | |||||| ||||||||||||| |  ||  | ||| | ||  ||||||||||||||||||    
T  43434742 ctcgcaactcggaaccaggtttctcacttttcttcttcctctttttcactccctcttttgaaccgatccaaagatttgttatgttttcacaacaatcatc 43434841  T
Q  198 aaaaacactgtttttcttcaaaacccaacatgattttagagcgtgttt 245  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43434842 aaaaacactatttttcttcaaaacccaacatgattttggagcgtgttt 43434889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 43426250 - 43426389
Alignment:
Q  111 accaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgttt 210  Q
    |||||||| |||| || ||||||| | | |||||| | ||| | ||||||| ||||||| || |||| | ||||||||||| |||| ||||||||| |||    
T  43426250 accaggtttctcatttttcttcttcctccttttcacttcctatgttgaatcgttcacacaatttattaccttttcacaacagtcataaaaaacactattt 43426349  T
Q  211 ttcttcaaaacccaacatgattttagagcgtgtttacacc 250  Q
    ||||||||||||||||   |||||||||||||||||||||    
T  43426350 ttcttcaaaacccaactcaattttagagcgtgtttacacc 43426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 43426145 - 43426209
Alignment:
Q  27 tccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 91  Q
    ||||| |||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  43426145 tccaaacttttacgatgaatcgcatgaaagcaataaccacttccctcaaattcctcaaatcatca 43426209  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 43434665 - 43434723
Alignment:
Q  33 ctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 91  Q
    |||| |||||||||||| |||||||||||||  | |||||||||| |||||||||||||    
T  43434665 cttttacgatgaatcgcatgaaagcaataacctcgtccctcagatacctcaaatcatca 43434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 20251 - 20387
Alignment:
Q  109 gaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgt 208  Q
    |||||||||| ||||||| ||||||| | | |||||| ||||||||| |||||  ||  | ||| | ||  ||||||||||||||||||||||||||| |    
T  20251 gaaccaggtttctcacttttcttcttcctctttttcactccctctttggaatcgatccaaagatttgttatgttttcacaacaatcatcaaaaacactat 20350  T
Q  209 ttttcttcaaaacccaacatgattttagagcgtgttt 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  20351 ttttcttcaaaacccaacatgattttagagcgtgttt 20387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 41930402 - 41930441
Alignment:
Q  211 ttcttcaaaacccaacatgattttagagcgtgtttacacc 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41930402 ttcttcaaaacccaacatgattttagagcgtgtttacacc 41930441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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