View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_high_17 (Length: 264)
Name: NF6954_high_17
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_high_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8205434 - 8205171
Alignment:
| Q |
1 |
aagatgtcgaacgaggaggcggaaatggcggttgagcttctcgactcggacggtgatgggttgattgggttggatgattttgtgaagtttgtagagggag |
100 |
Q |
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| T |
8205434 |
aagatgtcaaacgaggaggcggaaatggcggttgagcttctcgactcggacggggatgggttgattgggttggatgattttgtgaagtttgtagagggag |
8205335 |
T |
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| Q |
101 |
ggaaagaggaagagaaagtaaatgacctaagagaggcttttaagatgtatgaaatggagggatgtggttgcatcacaccaaagagtctaaagagaatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205334 |
ggaaagaggaagagaaagtaaatgacctaagagaggcttttaagatgtatgaaatggaaggatgtggttgcatcacaccaaagagtctaaagagaatgct |
8205235 |
T |
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| Q |
201 |
tggaagattgggtgagtgtagaagtatagatgagtgtcaagctatgatttctcaatttgatatt |
264 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
8205234 |
tggaagattgggtgagtgtagaagtgtagatgaatgtcaagctatgatttctcaatttgatatt |
8205171 |
T |
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