View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6954_high_19 (Length: 247)
Name: NF6954_high_19
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4235837 - 4235597
Alignment:
| Q |
1 |
agtggataaagtaaccttgtaaacagaattgaggggtgggagaataacgcaaggtatatccttaaaaggactcattagggttataatggacttagaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235837 |
agtggataaagtaaccttgtaaacagaattgaggggtgggagaataacgcaaggtatatccttaaaaggactcattagggttataatggacttagaatca |
4235738 |
T |
|
| Q |
101 |
tctactaatgcaaaccaaccatggctagagccacaaagcgaaagtttagggttattagcatggcatacctgaaattgaaaagggtaccatcttttgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235737 |
tctactaatgcaaaccaaccatggctagagccacaaagcgaaagtttagggttattagcatggcatacctgaaattgaaaagggtaccatcttttgttta |
4235638 |
T |
|
| Q |
201 |
aaataccgtacaacccgttcttcttctctatattcttctct |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235637 |
gaataccgtacaacccgttcttcttctctatattcttctct |
4235597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 49145399 - 49145180
Alignment:
| Q |
5 |
gataaagtaaccttgtaaacagaattgaggggtgggagaataacgcaaggtatatccttaaaaggactcattagggttataatggacttagaatcatcta |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49145399 |
gataaagtaaccttgttaacagaattgaggggtgggagagtaatgcaaggtgtatccttaaaaggactcattagggttataatggacttggaatcatcta |
49145300 |
T |
|
| Q |
105 |
ctaatgcaaaccaaccatggctagagccacaaagcgaaagtttagggttattagcatggcatacctgaaattgaaaagggtaccatcttttgtttaaaat |
204 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
49145299 |
caaatgcaaaccaaccatggctagagccacagagcgaaagtttactattattagcatggcataactgaaattgaaaagggtgccatcttttgtttagaat |
49145200 |
T |
|
| Q |
205 |
accgtacaacccgttcttct |
224 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
49145199 |
accatacaaccaattcttct |
49145180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 49149914 - 49149784
Alignment:
| Q |
5 |
gataaagtaaccttgtaaacagaattgaggggtgggagaataacgcaaggtatatccttaaaaggactcattagggttataatggacttagaatcatcta |
104 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| ||||||| | ||||||||||||||||||| ||||||| |||| | |||||||||| ||||| |
|
|
| T |
49149914 |
gataaagtaaccttataaacccaattgatgggtggcagaataatgggaggtatatccttaaaaggattcattagtgttaaggtagacttagaataatcta |
49149815 |
T |
|
| Q |
105 |
ctaatgcaaaccaaccatggctagagccaca |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
49149814 |
ctaatgcaagccaaccatggctagagccaca |
49149784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University