View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_high_4 (Length: 717)
Name: NF6954_high_4
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 16 - 703
Target Start/End: Complemental strand, 23340246 - 23339559
Alignment:
| Q |
16 |
aagacaatgagaatgcagatgtttcctgcaatagacatacatatgaatactaaaattcagcactaaaaaagaaaagttaattacataatagggcaagaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23340246 |
aagacaatgagaatgcagatgtttcctgcaatagacatacatatgaatactaaaattcagcactaaaaaagaaaagttaattacataatagggcaagaac |
23340147 |
T |
|
| Q |
116 |
aatcattgtaataactaacatgtgaatctaaaataatactttgaaacaaatcgtatgaaaactgtttgactttattttactttttgttaccgaaactata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23340146 |
aatcattgtaataactaacatgtgaatctaaaataatactttgaaacaaatcgtatgaaaactgtttgactttattttacattttgttaccgaaactata |
23340047 |
T |
|
| Q |
216 |
agcataaaacaatttggtctttgaaagaaattaacgaattttcaaaatgatacttaagaattaaaaatatttgatctcattaaaaaatttggatagtcgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23340046 |
agcataaaacaatttggtctttgaaagaaattaacgaattttcaaaatgatacttaagaattaaaaatatttgatctcattaaaaaatttggatagtcgt |
23339947 |
T |
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| Q |
316 |
ctacgagactttctttatcacccctagctcttaaaaattatgtgattgaaattttttaactttcgaccatagttaaggtatttcattccactagactcct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339946 |
ctacgagactttctttatcacccctagctcttaaaaattatgtgactgaaattttttaactttcgaccatagttaaggtatttcattccactagactcct |
23339847 |
T |
|
| Q |
416 |
ataaggtatcc-atggtttaagtcatttggatgcgctatgagactaatcctcgagttggtctgccaactaaatggatgacttcaggaatggaattcaggt |
514 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339846 |
ataaggtatcctatggtttaagtcatttggatgcgctatgag-ctaatccttgagttggtctgccaactaaatggatgacttcaggaatggaattcaggt |
23339748 |
T |
|
| Q |
515 |
tcttttcaagagggagacatgagggaaagtcatgttaccatcacttccgacacaatcgattcaatttaaaatgaataaatatataatgtaatgtttctca |
614 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23339747 |
tcttttcaagagggaaacatgagggaaagtcatgttaccatcacttccgacacaatcgattcgatttaaaatgaataaatatataatgtaatgtttctca |
23339648 |
T |
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| Q |
615 |
ccagtccaccagtggcaattttaaggagcaagcaagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagt |
703 |
Q |
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| T |
23339647 |
ccagtccaccagtggcaattttaaggagcaagcaagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagt |
23339559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 23340530 - 23340568
Alignment:
| Q |
310 |
agtcgtctacgagactttctttatcacccctagctctta |
348 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
23340530 |
agtcgtttacgagactttctttatcacccctagctctta |
23340568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 28306152 - 28306117
Alignment:
| Q |
169 |
tatgaaaactgtttgactttattttactttttgtta |
204 |
Q |
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| T |
28306152 |
tatgaaaacagtttgactttattttactttttgtta |
28306117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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