View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_10 (Length: 432)
Name: NF6954_low_10
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 39810826 - 39811080
Alignment:
| Q |
1 |
acgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatgaacaatggg |
100 |
Q |
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| T |
39810826 |
acgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatgaacaatggg |
39810925 |
T |
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| Q |
101 |
gactttatgatgggtttgatgtcaagcttgagaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcctagaatggcggt |
200 |
Q |
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| T |
39810926 |
gactttatgatgggtttgatgtcaagcttgaaaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcccagaatggcggt |
39811025 |
T |
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| Q |
201 |
aagaatgcagtttttagcatactgaagttgaagatcatttagtatttgagattaa |
255 |
Q |
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| T |
39811026 |
aagaatgcagtttttagcatactgaagttgaagatcatttagtatttgagattaa |
39811080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 253 - 414
Target Start/End: Original strand, 39811128 - 39811289
Alignment:
| Q |
253 |
taacatgtcaattaattcagagtatttcaggtcttcaaacttattattggnnnnnnnnnnnnnttgcatagcatatatcagttatctctttgatggtttt |
352 |
Q |
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| T |
39811128 |
taacatatcaattaattcagagtattttaggtcttcaaacttaatattggaaaaaagtaaaaattgcatagcatatatcagttatctctttgatggtttt |
39811227 |
T |
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| Q |
353 |
atgtaaacaataccatgtcttaaatggaatttctgcaggttatccctcctggtatggacttt |
414 |
Q |
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| T |
39811228 |
atgtgaacaataccatgtcttaaatggaatttctgcaggttatccctcctggtatggacttt |
39811289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 15798199 - 15798398
Alignment:
| Q |
3 |
gtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatgaacaatgggga |
102 |
Q |
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| T |
15798199 |
gtataagatgatgaggaggatagaagcagaagaactttcccttgatgctgcagaacttgttattactagtacaaaacaagaaattgaggagcagtgggga |
15798298 |
T |
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| Q |
103 |
ctttatgatgggtttgatgtcaagcttgagaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcctagaatggcggtaa |
202 |
Q |
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| T |
15798299 |
ctttatgatggattcgatgtcaagcttgagaaagtattgcgtgctcgagccagacgtggtgtcaattgtcatggtcgatacatgccaaggatggcggtaa |
15798398 |
T |
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