View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6954_low_13 (Length: 340)

Name: NF6954_low_13
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6954_low_13
NF6954_low_13
[»] chr8 (1 HSPs)
chr8 (1-254)||(24859179-24859432)
[»] chr4 (2 HSPs)
chr4 (106-272)||(26901741-26901907)
chr4 (108-272)||(26897281-26897445)
[»] chr5 (2 HSPs)
chr5 (108-272)||(27205694-27205859)
chr5 (106-272)||(27210157-27210324)
[»] chr3 (4 HSPs)
chr3 (106-272)||(24047105-24047272)
chr3 (106-272)||(23674829-23674996)
chr3 (108-272)||(23679334-23679499)
chr3 (108-272)||(24051571-24051736)
[»] chr1 (2 HSPs)
chr1 (106-272)||(26406715-26406882)
chr1 (106-272)||(26411181-26411348)
[»] chr6 (2 HSPs)
chr6 (1-107)||(20482538-20482644)
chr6 (277-322)||(20486853-20486898)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 24859432 - 24859179
Alignment:
Q  1 tcatttgaatccatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgaataccatatatggaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24859432 tcatttgaatcaatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgtataccatatatggaa 24859333  T
Q  101 ttgaatctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24859332 ttgaatctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggt 24859233  T
Q  201 ggatgaacattgaagaaaaactgattttgttgaattcaccacatactgctttct 254  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24859232 ggatgaacattgaagaaaaactgattttgttgaattcaccgcatactgctttct 24859179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 26901741 - 26901907
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901741 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 26901840  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttcttcaacttagcattacaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26901841 aacattgaagaaaaactgattttgttgaattcaccacatactgcttacttcaacttagcattacaaa 26901907  T

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Target: chr4; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 26897281 - 26897445
Alignment:
Q  108 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26897281 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 26897380  T
Q  208 cattgaagaaaaactgattttgttgaattcaccacatactgctttcttcaacttagcattacaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26897381 cattgaagaaaaactgattttgttgaattcaccacatactgcttacttcaacttagcattacaaa 26897445  T

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Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 27205694 - 27205859
Alignment:
Q  108 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27205694 tgttgatggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 27205793  T
Q  208 cattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  27205794 cattgaagaaaaactgattttgttgaattcaccacatactgcttacgttcaacttagcattacaaa 27205859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 27210157 - 27210324
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27210157 tctgttggtggtattctagaggtggtatgttataaattatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 27210256  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  27210257 aacattgaagaaaaactgattttgttgaattcaccacatactacttacgttcaacttagcattacaaa 27210324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 24047272 - 24047105
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  24047272 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg 24047173  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  24047172 aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 24047105  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 23674996 - 23674829
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  23674996 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatg 23674897  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  23674896 aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 23674829  T

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Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 108 - 272
Target Start/End: Complemental strand, 23679499 - 23679334
Alignment:
Q  108 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23679499 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa 23679400  T
Q  208 cattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  23679399 cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 23679334  T

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Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 108 - 272
Target Start/End: Complemental strand, 24051736 - 24051571
Alignment:
Q  108 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  24051736 tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa 24051637  T
Q  208 cattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  24051636 cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 24051571  T

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Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 26406882 - 26406715
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26406882 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg 26406783  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  26406782 aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 26406715  T

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Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 26411348 - 26411181
Alignment:
Q  106 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26411348 tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg 26411249  T
Q  206 aacattgaagaaaaactgattttgttgaattcaccacatactgctttc-ttcaacttagcattacaaa 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  26411248 aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa 26411181  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 20482538 - 20482644
Alignment:
Q  1 tcatttgaatccatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgaataccatatatggaa 100  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20482538 tcatttgaatcaatgaaatatcatcctttgaatcaatgtattaattctattaattttgtgttagttttgtttcacattgaactgaataccagatatggaa 20482637  T
Q  101 ttgaatc 107  Q
    |||||||    
T  20482638 ttgaatc 20482644  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 20486853 - 20486898
Alignment:
Q  277 tgacaaagcaatggcctacaagaataagaagaacaacaaacctgat 322  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||    
T  20486853 tgacgaagcaatggcctaaaataataataagaacaacaaacctgat 20486898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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