View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_15 (Length: 302)
Name: NF6954_low_15
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 43077888 - 43077607
Alignment:
| Q |
1 |
ctaataaactgttccttccttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctatatatgttattaccaacttcattagtc |
100 |
Q |
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| T |
43077888 |
ctaataaactgttccttccttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctat----gttattaccaacttcattagtc |
43077793 |
T |
|
| Q |
101 |
aaatttt-agaacgatttcatcttgaaaatgaaaatgaaactaattaattacctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttc |
199 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43077792 |
aaatttttagaacgatttcatcttgaaaatgaaaatgaaactaattaattacctcaaaaagagagagagcattgccaaatatgaaatcaacagagccttc |
43077693 |
T |
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| Q |
200 |
aatataacaatctttgtaatagtgcctaccaatatgatcatacagtgtgtcctgtgcccctaagaatttgcagccaaggaacatag |
285 |
Q |
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| T |
43077692 |
aatataacaatctttataatagtgcctaccaatatgatcatacagtgtgtcctgtgcccctaagaatttgcagccaaggaacatag |
43077607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 33965261 - 33965367
Alignment:
| Q |
150 |
acctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttcaatataacaatctttgtaatagtgcctaccaatatgatcatacagtgtgt |
249 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || || || ||||||||||||||||| ||||| | |
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| T |
33965261 |
acctcaaatagagaaagagcattgccaaatatgaaatcaacagaaccttcaatgtaacaatctttatagtaatgtctaccaatatgatcataaagtgtat |
33965360 |
T |
|
| Q |
250 |
cctgtgc |
256 |
Q |
| |
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| ||||| |
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| T |
33965361 |
cttgtgc |
33965367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33964207 - 33964273
Alignment:
| Q |
8 |
actgttccttccttgtgctgttagtgctcctatattttgtgctattgcatgcacgtgacacccctat |
74 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
33964207 |
actgctccttccttgtgctgttagtgctcctgtatttcttgctattgcatgcacgtgacatccctat |
33964273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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