View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_17 (Length: 280)
Name: NF6954_low_17
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4325125 - 4324856
Alignment:
| Q |
1 |
agaccagagtcttgacgataggtgaaacaatcaacttctctgacatttgttcaaagctggcattaggctccaaaagattagcaggaccaagaaacaagat |
100 |
Q |
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| T |
4325125 |
agaccagagtcttgacgataggtgaaacaatcaacttctctgacatttgttcaaagctggcattaggctccaaaagattagcaggaccaagaaacaagat |
4325026 |
T |
|
| Q |
101 |
ttgtagaaccattctttcccatcctgcagattacaaccatcaagtttcatttcattttgaactcgaactctaaagtacgcaactcactttagagtgtaac |
200 |
Q |
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| T |
4325025 |
ttgtagaaccattctttcccatcctgcagattacaaccatcaagtttcatttcattttgaactcgaactctaaagtacgcaactcactttagagtgtaac |
4324926 |
T |
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| Q |
201 |
gtgaacaatatcaatcattaaacgagccctaacctttttgcaggtttcttttgttgtcaatcacaggttc |
270 |
Q |
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| T |
4324925 |
gtgaacaatatcaatcactaaacgagccctaacctttttgcaggtttcttttgttgtcaattacaggttc |
4324856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 37757440 - 37757482
Alignment:
| Q |
179 |
gcaactcactttagagtgtaacgtgaacaatatcaatcattaa |
221 |
Q |
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| T |
37757440 |
gcaactcactttagagtgtaaagtgaataatatcaatcgttaa |
37757482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 37763188 - 37763230
Alignment:
| Q |
179 |
gcaactcactttagagtgtaacgtgaacaatatcaatcattaa |
221 |
Q |
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| T |
37763188 |
gcaactcactttagagtgtaaagtgaataatatcaatcgttaa |
37763230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 25584001 - 25584053
Alignment:
| Q |
169 |
tctaaagtacgcaactcactttagagtgtaacgtgaacaatatcaatcattaa |
221 |
Q |
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|||||||| ||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
25584001 |
tctaaagtgagcaactcactttagagtgtaaagtgagtaatatcaaccattaa |
25584053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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