View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6954_low_19 (Length: 276)

Name: NF6954_low_19
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6954_low_19
NF6954_low_19
[»] chr1 (6 HSPs)
chr1 (1-256)||(18472643-18472898)
chr1 (8-256)||(25921693-25921939)
chr1 (9-113)||(43407207-43407307)
chr1 (160-256)||(16075097-16075193)
chr1 (222-256)||(33007406-33007440)
chr1 (222-256)||(43407122-43407156)
[»] chr7 (7 HSPs)
chr7 (3-256)||(48653552-48653805)
chr7 (33-211)||(7589136-7589312)
chr7 (3-73)||(48576954-48577021)
chr7 (9-113)||(10288631-10288731)
chr7 (222-256)||(10288546-10288580)
chr7 (222-256)||(40106227-40106261)
chr7 (222-256)||(49170058-49170092)
[»] chr5 (4 HSPs)
chr5 (3-256)||(42861613-42861866)
chr5 (14-190)||(25101745-25101915)
chr5 (14-190)||(25160838-25161008)
chr5 (223-256)||(6309186-6309219)
[»] chr6 (4 HSPs)
chr6 (1-256)||(13773138-13773393)
chr6 (61-174)||(20555538-20555644)
chr6 (222-256)||(10751315-10751349)
chr6 (222-256)||(23260369-23260403)
[»] chr2 (6 HSPs)
chr2 (17-256)||(35670507-35670746)
chr2 (3-256)||(12774147-12774406)
chr2 (3-173)||(28266950-28267121)
chr2 (3-170)||(41340068-41340233)
chr2 (222-256)||(18292449-18292483)
chr2 (222-256)||(40729182-40729216)
[»] chr8 (6 HSPs)
chr8 (85-190)||(3189255-3189363)
chr8 (80-188)||(22635850-22635958)
chr8 (223-259)||(22816028-22816064)
chr8 (222-256)||(22635738-22635772)
chr8 (222-256)||(41958177-41958211)
chr8 (159-256)||(44436477-44436573)
[»] chr4 (6 HSPs)
chr4 (20-256)||(13652750-13652986)
chr4 (20-256)||(13660875-13661111)
chr4 (192-256)||(2761815-2761879)
chr4 (15-102)||(42900030-42900117)
chr4 (222-256)||(55162571-55162605)
chr4 (223-256)||(69782-69815)
[»] chr3 (3 HSPs)
chr3 (9-113)||(7336534-7336634)
chr3 (222-256)||(5004475-5004509)
chr3 (222-256)||(7336449-7336483)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 18472898 - 18472643
Alignment:
Q  1 tcagatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472898 tcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctg 18472799  T
Q  101 gttgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18472798 gttgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtc 18472699  T
Q  201 taagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472698 taagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 18472643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 25921693 - 25921939
Alignment:
Q  8 gttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcct 107  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||     ||| |||| ||||||||||||| || ||||||    
T  25921693 gttatggaactgaaataataagaagaacaataagacttttatgagagatttcttttgtcatgt---gcatgatgtggtattactttctgtgtgattgcct 25921789  T
Q  108 aagtggc-gggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtttaagtg 206  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||  ||||||    
T  25921790 aagtggcggggattgcctctatttttattatcatgacatatgcatttttggtgtgccttagtggtgggttaaacttataattctttgtggtgcctaagtg 25921889  T
Q  207 gtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
      ||||||     | ||||||||||||||| |||  ||||||||||||||    
T  25921890 acgggattttgtttacattttcatgatcatacatgacatatgcatctgtg 25921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 43407307 - 43407207
Alignment:
Q  9 ttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgccta 108  Q
    |||||||||  |||||||| |||||||||||||  ||| ||||||||||||||||||| ||| |   ||| |||| ||||| ||||||| || |||||||    
T  43407307 ttatcgaacataaataataggaagagaaataagt-tttcatgaaagatttcttttgtcgtgtgt---atgatgtggtattattttctgtgtgattgccta 43407212  T
Q  109 agtgg 113  Q
    |||||    
T  43407211 agtgg 43407207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 16075097 - 16075193
Alignment:
Q  160 tgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||| |||||||||||  | ||| | || |||||||  | ||||| |||||| | ||| ||||||||||||||||||| ||| |||||||||||    
T  16075097 tgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtg 16075193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 33007440 - 33007406
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||| |||||||||||||||||||||||||    
T  33007440 cattttcataatcatgcatagcatatgcatctgtg 33007406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 43407156 - 43407122
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  43407156 cattttcatgatcatgcatggcatatgcatctgtg 43407122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 48653805 - 48653552
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggt 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  48653805 agatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttatcatgtataagatgttgtgttattactttctgtgtggt 48653706  T
Q  103 tgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgttta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||    
T  48653705 tgcctaagtggcgggattgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgccta 48653606  T
Q  203 agtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48653605 agtggcgggattcatgatccattttcatgatcatgcataacatatgcatctgtg 48653552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 7589312 - 7589136
Alignment:
Q  33 agaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtggcgggattgcatctattttt 132  Q
    ||||||||| |||||||| ||||  |||||||||||||  |  ||  |||||||||| || |||| ||||   ||  ||||||||  |||||||||||||    
T  7589312 agaaataagacttttatggaagacctcttttgtcatgtgcattataatgtgttattatttcctgtgtggtcctcttggtggcggggatgcatctattttt 7589213  T
Q  133 attatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtggg 211  Q
    |||||||||||||  |||||||| |||| ||| |||| ||||||||| |||||||| | ||||||| ||||||||||||    
T  7589212 attatcatgacat--gcatttttagtgtccctcagtgacgggttaaatttataattttttgtggtgcttaagtggtggg 7589136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 48576954 - 48577021
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtata 73  Q
    |||||||||||||||| |||||||||||   ||||| ||||||||||||||||||||||||||||||||||    
T  48576954 agatcgttatcgaactaaaataataaga---gaaatgagccttttatgaaagatttcttttgtcatgtata 48577021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 10288731 - 10288631
Alignment:
Q  9 ttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgccta 108  Q
    |||||||||  |||||||| |||||||||||||  ||| ||||||||||||||||||| ||| |   ||| |||| ||||| ||||||| || |||||||    
T  10288731 ttatcgaacataaataataggaagagaaataagt-tttcatgaaagatttcttttgtcgtgtgt---atgatgtggtattattttctgtgtgattgccta 10288636  T
Q  109 agtgg 113  Q
    |||||    
T  10288635 agtgg 10288631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 10288580 - 10288546
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  10288580 cattttcatgatcatgcatggcatatgcatctgtg 10288546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 40106227 - 40106261
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  40106227 cattttcatgatcatgcatggcatatgcatctgtg 40106261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 49170092 - 49170058
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  49170092 cattttcatgatcatgcatggcatatgcatctgtg 49170058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 42861613 - 42861866
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggt 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  42861613 agatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttcagtgtggt 42861712  T
Q  103 tgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgttta 202  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||    
T  42861713 tgtctaagtggcgggattgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgccta 42861812  T
Q  203 agtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42861813 tgtggcgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 42861866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 25101915 - 25101745
Alignment:
Q  14 gaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtgg 113  Q
    ||||||||||||||||||    |||||| ||||||||| || |||| ||||||||||     ||| |||| ||||| ||||||| ||||||| |||||||    
T  25101915 gaactgaaataataagaa---caataagacttttatgagagttttcatttgtcatgt---gcatgatgtggtattattttctgtgtggttgcttaagtgg 25101822  T
Q  114 c-gggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattct 190  Q
    | ||||||||||||| ||| |||||||||| ||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  25101821 cggggattgcatcta-tttgattatcatgatatatgcatttttgatgtaccttagtggcgggttaaacttataattct 25101745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 25161008 - 25160838
Alignment:
Q  14 gaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtgg 113  Q
    ||||||||||||||||||    |||||| ||||||||| || |||| ||||||||||     ||| |||| ||||| ||||||| ||||||| |||||||    
T  25161008 gaactgaaataataagaa---caataagacttttatgagagttttcatttgtcatgt---gcatgatgtggtattattttctgtgtggttgcttaagtgg 25160915  T
Q  114 c-gggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattct 190  Q
    | ||||||||||||| ||| |||||||||| ||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  25160914 cggggattgcatcta-tttgattatcatgatatatgcatttttgatgtaccttagtggcgggttaaacttataattct 25160838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 6309186 - 6309219
Alignment:
Q  223 attttcatgatcatgcatagcatatgcatctgtg 256  Q
    |||||||||||||||||| |||||||||||||||    
T  6309186 attttcatgatcatgcatggcatatgcatctgtg 6309219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 13773393 - 13773138
Alignment:
Q  1 tcagatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  13773393 tcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataggatgttgagttattactttctgtgtg 13773294  T
Q  101 gttgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||      
T  13773293 gttgcctaagtggcgggattgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcc 13773194  T
Q  201 taagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  13773193 taagtggcgagatccatgatccattttcatgatcatgcatagcatatacatctgtg 13773138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 20555538 - 20555644
Alignment:
Q  61 tttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtggcgggattgcatctatttttattatcatgacataagcattttttgtgt 160  Q
    ||||||||||| | ||||||||||||||||||||      |||||| |||||| || ||| |||||||||||||||||||||||||| ||||||| ||||    
T  20555538 tttgtcatgtacatgatgttgtgttattactttc------gttgcccaagtggtgg-attccatctatttttattatcatgacataaacatttttggtgt 20555630  T
Q  161 gccttagtggcggg 174  Q
    || |||||||||||    
T  20555631 gctttagtggcggg 20555644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 10751349 - 10751315
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  10751349 cattttcatgatcatgcatggcatatgcatctgtg 10751315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 23260403 - 23260369
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  23260403 cattttcatgatcatgcatggcatatgcatctgtg 23260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 35670746 - 35670507
Alignment:
Q  17 ctgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtggcgg 116  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  35670746 ctgaaataataagcagataaatgagccttttatgaaagatttcttttgtcatgtataagatgtcgtgttattactttctgtgtggttgcctaagtggcgg 35670647  T
Q  117 gattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtgggattca 216  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||  || |||| ||||||||    
T  35670646 gattgcatctatttttattatcatgacataagaatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattca 35670547  T
Q  217 tgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35670546 tgatccattttcatgatcatgcatagcatatgcatctgtg 35670507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 12774406 - 12774147
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataa-----gccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgt 97  Q
    |||||||||||||||| ||||||||| ||||||||| |     ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  12774406 agatcgttatcgaactaaaataataataagagaaattaaatgagccttttatgaaagatttcttttgtcatgtacatgatgttgtattattactttctgt 12774307  T
Q  98 ctggttgcctaagtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtgg 196  Q
     ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||  | |||  ||| |||||    
T  12774306 gtggttgcctaagtggcggggattgcatctgtttttattatcatgacataagcatttgtggtgtgccttagtggcgggataatatcatatctctttgtgg 12774207  T
Q  197 tgtttaagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||  ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12774206 tgcctaagtggcgggattcatgattcattttcatgatcatgcatcgcatatgcatctgtg 12774147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 28267121 - 28266950
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggt 102  Q
    |||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  28267121 agatcgttatcgaactaaaataataagaagggaaatgagccctttatgaaagatttcttttgtcatgtacatgatgttgtgttattactttctgtgtggt 28267022  T
Q  103 tgcctaagtggcgg-gattgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgg 173  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28267021 tgcctaagtggcggagattgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgg 28266950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 41340233 - 41340068
Alignment:
Q  3 agatcgttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggt 102  Q
    |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||| |||     ||| |||| ||||| ||||||| ||||    
T  41340233 agattgttatcgaacagaaataataataagagaaataagctttttatgaaagattttttttgtcgtgt---gcatgatgtggtattattttctgtgtggt 41340137  T
Q  103 tgcctaag-tggcgggattgcatctatttttattatcatgacataagcattttttgtgtgccttagtgg 170  Q
    || ||||| ||  |||||||||| |||||||||| |||| | ||  |||||||| ||||||||||||||    
T  41340136 tgtctaagttgtggggattgcatatatttttattctcataatatgtgcatttttggtgtgccttagtgg 41340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 18292483 - 18292449
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  18292483 cattttcatgatcatgcatggcatatgcatctgtg 18292449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 40729216 - 40729182
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  40729216 cattttcatgatcatgcatggcatatgcatctgtg 40729182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 3189363 - 3189255
Alignment:
Q  85 tattactttctgtctggttgcctaagtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcggg---ttaaac 180  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| |||||||||| |||||||| ||||||||||||||||||   ||||||    
T  3189363 tattactttctgtgtggttgcctaagtggcggggattgcatctatttg-attctcatgacatatgcatttttggtgtgccttagtggcgggtaattaaac 3189265  T
Q  181 ttataattct 190  Q
    ||||||||||    
T  3189264 ttataattct 3189255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 22635958 - 22635850
Alignment:
Q  80 tgtgttattactttctgtctggttgcctaagtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaa 178  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| |||||||||| |||||||| | |||| ||| |||||||||||    
T  22635958 tgtggtattactttctgtgtggttgcctaagtggcggggattgcatctatttg-attctcatgacatatgcatttttggagtgctttaatggcgggttaa 22635860  T
Q  179 acttataatt 188  Q
    ||||||||||    
T  22635859 acttataatt 22635850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 22816064 - 22816028
Alignment:
Q  223 attttcatgatcatgcatagcatatgcatctgtgcgg 259  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22816064 attttcatgatcatgcatggcatatgcatctgtgcgg 22816028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 22635772 - 22635738
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  22635772 cattttcatgatcatgcatggcatatgcatctgtg 22635738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 41958211 - 41958177
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  41958211 cattttcatgatcatgcatggcatatgcatctgtg 41958177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 44436477 - 44436573
Alignment:
Q  159 gtgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    |||||||||| |||||||| | ||||| |||| |||||||  | ||||||||| || |   || |||||||||||||||| | |||||||||||||||    
T  44436477 gtgccttagttgcgggttataattata-ttctgtgtggtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtg 44436573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 13652750 - 13652986
Alignment:
Q  20 aaataataagaagagaaa-taagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtggcggg- 117  Q
    |||||||||||||||||| |||| |||| ||| ||||  |||||||||||||  | |||  |||| ||||| ||| ||| || |||||| |||||||||     
T  13652750 aaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcgggg 13652848  T
Q  118 attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtgggattca- 216  Q
    ||||||||||  ||||||||| ||||||| | ||||   ||||||||| |||||||||||||||||| ||||| ||||||   ||||||| ||| || |     
T  13652849 attgcatctacctttattatcgtgacatatgtatttg--gtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggttttag 13652946  T
Q  217 tgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    |  | ||||||||||||||||||| | |||||||| ||||    
T  13652947 tcttgcattttcatgatcatgcatggtatatgcatttgtg 13652986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 13660875 - 13661111
Alignment:
Q  20 aaataataagaagagaaa-taagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaagtggcggg- 117  Q
    |||||||||||||||||| |||| |||| ||| ||||  |||||||||||||  | |||  |||| ||||| ||| ||| || |||||| |||||||||     
T  13660875 aaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcgggg 13660973  T
Q  118 attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtttaagtggtgggattca- 216  Q
    ||||||||||  ||||||||| ||||||| | ||||   ||||||||| |||||||||||||||||| ||||| ||||||   ||||||| ||| || |     
T  13660974 attgcatctacctttattatcgtgacatatgtatttg--gtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggttttag 13661071  T
Q  217 tgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    |  | ||||||||||||||||||| | |||||||| ||||    
T  13661072 tcttgcattttcatgatcatgcatggtatatgcatttgtg 13661111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 2761879 - 2761815
Alignment:
Q  192 tgtggtgtttaagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||| ||||||||||||||| | ||| ||||||||||||||||||| |||||||||| ||||    
T  2761879 tgtggtgcttaagtggtgggatttaggattcattttcatgatcatgcatggcatatgcatttgtg 2761815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 42900117 - 42900030
Alignment:
Q  15 aactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggt 102  Q
    |||| |||||||||||||||||||||| |||||||| || || || ||||||| ||  | | |  |||||||||||||||||| ||||    
T  42900117 aactaaaataataagaagagaaataagacttttatggaaaatctcatttgtcaggtgcaggttaatgtgttattactttctgtgtggt 42900030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 55162571 - 55162605
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  55162571 cattttcatgatcatgcatggcatatgcatctgtg 55162605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 69782 - 69815
Alignment:
Q  223 attttcatgatcatgcatagcatatgcatctgtg 256  Q
    |||||||||||||||||| |||||||||||||||    
T  69782 attttcatgatcatgcatggcatatgcatctgtg 69815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 7336634 - 7336534
Alignment:
Q  9 ttatcgaactgaaataataagaagagaaataagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgccta 108  Q
    |||||||||  |||||||| |||||||||||||  ||| ||||||||||||||||||| ||| |   ||| |||| ||||| ||||||| || |||||||    
T  7336634 ttatcgaacataaataataggaagagaaataagt-tttcatgaaagatttcttttgtcgtgtgt---atgatgtggtattattttctgtgtgattgccta 7336539  T
Q  109 agtgg 113  Q
    |||||    
T  7336538 agtgg 7336534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 5004509 - 5004475
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  5004509 cattttcatgatcatgcatggcatatgcatctgtg 5004475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 7336483 - 7336449
Alignment:
Q  222 cattttcatgatcatgcatagcatatgcatctgtg 256  Q
    ||||||||||||||||||| |||||||||||||||    
T  7336483 cattttcatgatcatgcatggcatatgcatctgtg 7336449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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