View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6954_low_21 (Length: 271)

Name: NF6954_low_21
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6954_low_21
NF6954_low_21
[»] chr4 (8 HSPs)
chr4 (4-150)||(12088577-12088724)
chr4 (148-253)||(43288003-43288108)
chr4 (148-243)||(13010399-13010493)
chr4 (206-258)||(43472249-43472301)
chr4 (175-242)||(11913948-11914015)
chr4 (157-223)||(31767325-31767390)
chr4 (146-188)||(6663739-6663781)
chr4 (146-192)||(31890167-31890213)
[»] chr5 (3 HSPs)
chr5 (4-150)||(36331877-36332024)
chr5 (12-89)||(40351919-40351996)
chr5 (146-188)||(25634833-25634875)
[»] scaffold0002 (2 HSPs)
scaffold0002 (4-150)||(420040-420187)
scaffold0002 (39-110)||(215489-215560)
[»] chr7 (1 HSPs)
chr7 (148-258)||(32352290-32352400)
[»] chr1 (1 HSPs)
chr1 (148-258)||(43254261-43254371)
[»] chr2 (3 HSPs)
chr2 (148-258)||(27107376-27107486)
chr2 (146-192)||(1234941-1234987)
chr2 (148-196)||(8424678-8424726)
[»] chr3 (4 HSPs)
chr3 (39-150)||(20160195-20160293)
chr3 (146-243)||(9372059-9372156)
chr3 (157-208)||(14655064-14655114)
chr3 (148-204)||(14658325-14658380)
[»] chr8 (3 HSPs)
chr8 (148-243)||(22264494-22264588)
chr8 (148-243)||(609804-609898)
chr8 (157-243)||(38678841-38678926)
[»] chr6 (1 HSPs)
chr6 (148-204)||(2936003-2936058)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 12088577 - 12088724
Alignment:
Q  4 ataatccttgatcaatttcctattgtagtaccctacccc-agggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgat 102  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12088577 ataatccttgatcaatttccttttgtagtaccctacccccaggggaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgat 12088676  T
Q  103 gggggcatacttgcccgacctccattctactatgttcatacatagtat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12088677 gggggcatacttgcccgacctccattctactatgttcatacatagtat 12088724  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 43288108 - 43288003
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43288108 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaataaacaagtcat 43288009  T
Q  248 taacgg 253  Q
    ||||||    
T  43288008 taacgg 43288003  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 13010399 - 13010493
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaag 243  Q
    |||| ||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| ||||||||    
T  13010399 tattaaagagaataaactagaaggatat-aagtaaacttatctgttcttgaaattgcggtgatttgaagtcggtaacggtgaagtaagcaaacaag 13010493  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 43472301 - 43472249
Alignment:
Q  206 gtgattcgaagtcggtaatgttgaaataaacaaacaagtcattaacggtgatg 258  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43472301 gtgattcgaagtcggtaatgttgaaataaacaaataagtcattaacggtgatg 43472249  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 11913948 - 11914015
Alignment:
Q  175 tcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaa 242  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||| ||| | |||| |||||||||||    
T  11913948 tcaaggaaacttatctgttcttgaaattgtggtgatttgaagtcgataacgatgaagtaaacaaacaa 11914015  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 31767325 - 31767390
Alignment:
Q  157 gaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaa 223  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||| ||| |||||||    
T  31767325 gaataaataagagggataacaagtaaacttatct-ttcttgaaattgcggtaatttgaactcggtaa 31767390  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 6663739 - 6663781
Alignment:
Q  146 agtatttaagggaataaacaagagggatatcaagtaaacttat 188  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  6663739 agtattaaagagaataaacaagagagatatcaagtaaacttat 6663781  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 31890213 - 31890167
Alignment:
Q  146 agtatttaagggaataaacaagagggatatcaagtaaacttatctgt 192  Q
    |||||| ||| ||||||||||||| |||||||||||||||| |||||    
T  31890213 agtattaaagagaataaacaagagagatatcaagtaaacttttctgt 31890167  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 36331877 - 36332024
Alignment:
Q  4 ataatccttgatcaatttcctattgtagtaccctacccc-agggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgat 102  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36331877 ataatccttgatcaatttccttttgtagtaccctacccccaggggaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgat 36331976  T
Q  103 gggggcatacttgcccgacctccattctactatgttcatacatagtat 150  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  36331977 gggggcatacttgcccgacctcaattctactatgttcatacatagtat 36332024  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 40351919 - 40351996
Alignment:
Q  12 tgatcaatttcctattgtagtaccctaccccagggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaa 89  Q
    ||||||||||||| || ||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||    
T  40351919 tgatcaatttccttttctagtaccctacccccaggggagtcgaatccccgttgcctccttgaaagagagatgtcctaa 40351996  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 25634833 - 25634875
Alignment:
Q  146 agtatttaagggaataaacaagagggatatcaagtaaacttat 188  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||    
T  25634833 agtattaaagagaataaacaagagagatatcaagtaaacttat 25634875  T

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Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 420040 - 420187
Alignment:
Q  4 ataatccttgatcaatttcctattgtagtaccctacccc-agggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgat 102  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  420040 ataatccttgatcaatttccttttgtagtaccctacccctaggggaagtcgaatccccgttgcctccttgaaagagagatgtcgtaaaccactagacgat 420139  T
Q  103 gggggcatacttgcccgacctccattctactatgttcatacatagtat 150  Q
    ||||||||||||||  ||||||||||||||||||||  ||||||||||    
T  420140 gggggcatacttgcttgacctccattctactatgtttgtacatagtat 420187  T

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Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 215560 - 215489
Alignment:
Q  39 ccccagggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgatgggggcat 110  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  215560 ccccaggggaagtcgaatccccgatgcctccttgaaagagagatgtcctgaaccactagacgataggggcat 215489  T

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Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 32352290 - 32352400
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 247  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32352290 tatttaagcgaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 32352389  T
Q  248 taacggtgatg 258  Q
    ||||| |||||    
T  32352390 taacgatgatg 32352400  T

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Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 43254371 - 43254261
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 247  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43254371 tatttaagggaataaacaagagggatatcaaataaacttatctgttcttgaaattgtggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 43254272  T
Q  248 taacggtgatg 258  Q
    |||||||||||    
T  43254271 taacggtgatg 43254261  T

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Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 27107486 - 27107376
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 247  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27107486 tatttaagggaataatcaagaggaatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaagtcat 27107387  T
Q  248 taacggtgatg 258  Q
    ||| |||||||    
T  27107386 taatggtgatg 27107376  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 1234987 - 1234941
Alignment:
Q  146 agtatttaagggaataaacaagagggatatcaagtaaacttatctgt 192  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  1234987 agtattaaagagaataaacaagagagatatcaagtaaacttatctgt 1234941  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 8424726 - 8424678
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttctt 196  Q
    |||| ||| ||||||||||||||||||||||||||||| ||| ||||||    
T  8424726 tattgaagagaataaacaagagggatatcaagtaaactcatccgttctt 8424678  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 20160293 - 20160195
Alignment:
Q  39 ccccagggtaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacgatgggggcatacttgcccgacctccattctactatgtt 138  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||| |||||||||||||||||||    
T  20160293 ccccaggggaagtcgaatccccgttgcctccttgaaagagagatgtcctaaaccactagacga-------------gcccaacctccattctactatgtt 20160207  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 9372059 - 9372156
Alignment:
Q  146 agtatttaagggaataaacaagagggatatcaagtaaacttatctgttcttg-aaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaag 243  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||| |||||| ||| || ||||||| ||||||||||| | |||| |||| |||||||    
T  9372059 agtattaaagagaataaacaagagggataacaagtaaacttatct-ttcttgaaaactgtggtgatttgaagtcggtaacggtgaagtaaataaacaag 9372156  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 14655114 - 14655064
Alignment:
Q  157 gaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtg 208  Q
    |||| |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  14655114 gaattaacaagagagataacaagtaaacttatct-ttcttgaaattgcggtg 14655064  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 14658380 - 14658325
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgc 204  Q
    |||| ||| |||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  14658380 tattaaagagaattaacaagagggataacaagtaaactcatct-ttcttgaaattgc 14658325  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 22264588 - 22264494
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaag 243  Q
    |||| ||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||| | |||| ||||||||||||    
T  22264588 tattaaagagaataaactagagggatat-aagtaaacttatttgttcttgaaattgcggtgatttgaagttggtaacggtgaagtaaacaaacaag 22264494  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 609804 - 609898
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaag 243  Q
    |||| ||| |||||||||||||||||| ||| ||||||||||| | |||||||||||||||||| || || ||||||| |||| ||||||||||||    
T  609804 tattaaagagaataaacaagagggataacaaataaacttatct-tccttgaaattgcggtgatttgacgttggtaatggtgaagtaaacaaacaag 609898  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 38678926 - 38678841
Alignment:
Q  157 gaataaacaagagggatatcaagtaaacttatctgttcttgaaattgcggtgattcgaagtcggtaatgttgaaataaacaaacaag 243  Q
    |||||||| |||||||||| ||||||||||||||||| | |||||| |||||||| ||||||||||| | |||| ||| ||||||||    
T  38678926 gaataaactagagggatat-aagtaaacttatctgttttggaaattacggtgatttgaagtcggtaacggtgaagtaagcaaacaag 38678841  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 2936003 - 2936058
Alignment:
Q  148 tatttaagggaataaacaagagggatatcaagtaaacttatctgttcttgaaattgc 204  Q
    |||| ||| |||||||||||||||||| ||| ||| ||||||| |||||||||||||    
T  2936003 tattaaagagaataaacaagagggataacaattaatcttatct-ttcttgaaattgc 2936058  T

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