View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_29 (Length: 229)
Name: NF6954_low_29
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_29 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 4236046 - 4235830
Alignment:
| Q |
6 |
agtatcatctgaataaccaaaattgaaagatatgatcttgtttcggacattaagagcaaataatagatctttataaaatatgacatcaataaaagaagat |
105 |
Q |
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| T |
4236046 |
agtatcatctgaataaccaaaattgaaagatatgatcttgtttcggacattgagagcaaataatagacctttataaaatatgacatcaataaaagaaga- |
4235948 |
T |
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| Q |
106 |
tttgatgtgtctatataagtccaattttgttgacctcttccaatgtaaacaagattaccagagtcataaattgctacaactacaaccatataattatttg |
205 |
Q |
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| T |
4235947 |
tttgatgtgtctatataagtccaattttgttgacctcttccaatgtaagcaagattaccagagtcataaattg------ctacaaccatataattatttg |
4235854 |
T |
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| Q |
206 |
gactttttattggattagtggata |
229 |
Q |
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| T |
4235853 |
gactttttattggattagtggata |
4235830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 49145616 - 49145434
Alignment:
| Q |
6 |
agtatcatctgaataaccaaaattgaaagatatgatcttgtttcggacattaagagcaaataatagatctttataaaatatgacatcaataaaagaagat |
105 |
Q |
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| T |
49145616 |
agtatcatctgaataaccaaaattgaatgatacaatcttgtttcggatattgagagcaaataatagacctttataaaatatgacatcaatgaaagaagat |
49145517 |
T |
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| Q |
106 |
tttgatgtgtctatataagtccaattttgttgacctcttccaatgtaaacaagattaccaga---gtcataaattgctacaac |
185 |
Q |
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| T |
49145516 |
tttgatgtgtctatataagtccaattttgttgacctcgtccaacataagcaagattaccacaatcatcataaattgctacaac |
49145434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 49150077 - 49149969
Alignment:
| Q |
59 |
gagcaaataatagatctttataaaatatgacatcaataaaagaagattttgatgtgtctatataagtccaattttgttgacctcttccaatgtaaacaag |
158 |
Q |
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| T |
49150077 |
gagcaaataatagacctttatagaatataacatcaatgaaataagaattcgatgtatctatattagtccaatttttttggcctcttctaataaaagcaag |
49149978 |
T |
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| Q |
159 |
attaccaga |
167 |
Q |
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| T |
49149977 |
attaccaga |
49149969 |
T |
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