View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_30 (Length: 228)
Name: NF6954_low_30
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36773899 - 36774126
Alignment:
| Q |
1 |
tcaataaaacataagtattgtcattcatgacatacacaaatcacttcatttgtgttccatgcaatgtgtgtgcatctagtagtaaaaatggtaacaagat |
100 |
Q |
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| T |
36773899 |
tcaataaaacataagtattgtcattcatgacatacacaaatcacttcatttgtgttccatgcaatgtgtgtgcatctagtagtaaaaatggtaacaagat |
36773998 |
T |
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| Q |
101 |
tttctaaccttcatgtatttgtttaaaccataccatgttaatcagtatatgtgtgtgcgaattcaaaaacacagtaaccgtaaatataaacacgacattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36773999 |
tttctaaccttcatgtatttgtttaaaccataccatgttaatcagtatatgtgtgtgcgaattcaaaaacacagtaaccgtaaatataaacatgacattc |
36774098 |
T |
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| Q |
201 |
aacagtttttaactaaccatgtaattgc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36774099 |
aacagtttttaactaaccatgtaattgc |
36774126 |
T |
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