View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_31 (Length: 218)
Name: NF6954_low_31
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 43948138 - 43947957
Alignment:
| Q |
16 |
gaagaaactgctaagttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaacattactatcaattatcactctga |
115 |
Q |
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| T |
43948138 |
gaagaaactgctaagttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaacatta---tcaattatcactctga |
43948042 |
T |
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| Q |
116 |
aatcattcaaatcaaaagtttacaaagaggtataaaaaacgaagcaaacaaatattaacataacatgaaatattaaaaaattgac |
200 |
Q |
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| T |
43948041 |
aatcattcaaatcaaaagtttacaaagaggtataaaaaacgaagcaaacaaatattaacataacatgaaatattaaaaaattgac |
43947957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 36612073 - 36612178
Alignment:
| Q |
24 |
tgctaagttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaacat--tactatcaattatcactctgaaatcat |
121 |
Q |
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| T |
36612073 |
tgctacgttaggttggcaattctccaccttatcttcatttgatgatctatcatcctaaattccaaaaacataaaattatcaattttcaccgtgaaatcat |
36612172 |
T |
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| Q |
122 |
tcaaat |
127 |
Q |
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|||||| |
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| T |
36612173 |
tcaaat |
36612178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 36664012 - 36664064
Alignment:
| Q |
30 |
gttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaa |
82 |
Q |
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| T |
36664012 |
gttaggttggcgcttctccacctcatcttcatttgatgatttatcatcctaaa |
36664064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 36632092 - 36632031
Alignment:
| Q |
30 |
gttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaa |
91 |
Q |
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| T |
36632092 |
gttaggttggtgcttctccaccttatcttcatttgatgatttatcaccctaaaggcaaaaaa |
36632031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 19656673 - 19656769
Alignment:
| Q |
30 |
gttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaacattac--tatcaattatcactctgaaatcattca |
124 |
Q |
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| T |
19656673 |
gttagtttggcacttctccaccttatcttcatttgatgatttatcatcctaaataacaaaaacataacattatcaattgtcactgtgaaatcattca |
19656769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 19673609 - 19673705
Alignment:
| Q |
30 |
gttaggttggcacttctccagctgatcttcatttgatgatttgtcatcctaaatgccaaaaacattac--tatcaattatcactctgaaatcattca |
124 |
Q |
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| T |
19673609 |
gttagtttggcacttctccaccttatcttcattcgacgatttatcatcctaaataacaaaaacataacattatcaattgtcaccgtgaaatcattca |
19673705 |
T |
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