View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_32 (Length: 203)
Name: NF6954_low_32
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 16360173 - 16360345
Alignment:
| Q |
16 |
ctgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttgaatgtataatatct |
115 |
Q |
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| T |
16360173 |
ctgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggatttttatatatgtaagtgtctgcctatttcatttgaatgtataatatct |
16360272 |
T |
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| Q |
116 |
tccaattttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatg |
188 |
Q |
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| T |
16360273 |
tccatttttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatg |
16360345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 43621431 - 43621258
Alignment:
| Q |
16 |
ctgtggcagtgagtaagcgcaaatccacaaaggggtttt-atcaaaattggagttttatatatgtaagtgtctgcctatttcatttgaatgtataatatc |
114 |
Q |
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| T |
43621431 |
ctgtggcagtgagtaagcgcaaatccacaaaggggtttttatcaaaattggagttttatatacgtaagtgtctgcctatttcatttgaatgtataatatc |
43621332 |
T |
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| Q |
115 |
ttccaattttgtaactttgttctgataagatgtcgtgaaaatttctgattgcagacttttaatttgttgtgatg |
188 |
Q |
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| T |
43621331 |
tttcattttggtaactttgttctgataagatgttgtgaaattttttgaatgcagacttttaatttgttgtgatg |
43621258 |
T |
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Target: chr1 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 34081469 - 34081386
Alignment:
| Q |
17 |
tgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttg |
101 |
Q |
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| T |
34081469 |
tgtggcagggagtaa-cgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttcatttg |
34081386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 12720347 - 12720268
Alignment:
| Q |
17 |
tgtggcagtgagtaagcgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttca |
97 |
Q |
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| T |
12720347 |
tgtggcagggagtaa-cgcaaatccacaaaggggttttatcaaaattggagttttatatatgtaagtgtctgcctatttca |
12720268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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