View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6954_low_5 (Length: 616)
Name: NF6954_low_5
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6954_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 8825690 - 8826280
Alignment:
| Q |
18 |
acaagtagttgggaaaatcagttaataaaatcaactagttcgtgacaacaacataacacatacatgtgcccatttattaattctcttatgacacggtctc |
117 |
Q |
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| T |
8825690 |
acaagtagttgggaaaatcagttaataaaatcaactagttcgtgacaacaacataacacatacatgtgcccatttattaattctcttatgacacggtctc |
8825789 |
T |
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| Q |
118 |
aacattttgtcacaacgcaaatccaccaccaaccacattaatgcccaatgttctaaattcatgagaccatagctaattttgatcaaacattttcatcata |
217 |
Q |
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| T |
8825790 |
aacattttgtcacaacgcaaatccaccaccaaccacattaatgcccaatgttctaaattcatgagaccatagctaattttgatcaaacattttcatcata |
8825889 |
T |
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| Q |
218 |
gtgtgtgttgttttttatcaaacatggtggaagaaaatagagaagaaggtagatccttagctgagacccctacttgggctgttgcaactgtcatcactct |
317 |
Q |
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| T |
8825890 |
gtgtgtgttgttttttatcaaacatggtggaagaaaatagagaagaaggtagatccttagccgagacccctacttgggctgttgcaactgtcatcactct |
8825989 |
T |
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| Q |
318 |
tttggtttctcttagtttcttgtctaatggcacattgaaaaaattggttaaggtacatacatacatta-----------ctttctttctaatttctcaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8825990 |
tttggtttctcttagtttcttgtctaatggcacattgaaaaaattggttaaggtacatacatacattactttgtatatcctttctttctaatttctcaca |
8826089 |
T |
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| Q |
407 |
ttcatacataagtttcttatacattgaataataattaatgtcacagtggttgggtagaactaagagaaaatcccttctctccgctttggaaaaaatgcaa |
506 |
Q |
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| T |
8826090 |
ttcatacatgagtttcttatacattgaataataattaatgtcacagtggttgggtagaactaagagaaaatcccttctctccgctttggaaaaaatgcaa |
8826189 |
T |
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| Q |
507 |
gaaggtaaggataaggactatgtaatgtaattgtcacattactataaaaagttgattataaatggaaattagagattggaaaatagctgattttgat |
603 |
Q |
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| T |
8826190 |
gaagg------taaggactatgtaatgtaattgtcacattactataaaaagttgattataaatggaaattagagattggaaaatagctgattttgat |
8826280 |
T |
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