View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6954_low_6 (Length: 608)

Name: NF6954_low_6
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6954_low_6
NF6954_low_6
[»] chr6 (2 HSPs)
chr6 (18-602)||(3314217-3314798)
chr6 (205-343)||(3321400-3321538)
[»] chr7 (2 HSPs)
chr7 (206-337)||(2298334-2298465)
chr7 (25-65)||(23920239-23920279)
[»] chr4 (6 HSPs)
chr4 (28-65)||(28286403-28286440)
chr4 (24-79)||(13834441-13834497)
chr4 (33-77)||(35075737-35075781)
chr4 (18-65)||(36409650-36409698)
chr4 (18-65)||(36423816-36423864)
chr4 (24-79)||(51150954-51151010)
[»] chr1 (3 HSPs)
chr1 (18-90)||(6541107-6541180)
chr1 (27-77)||(30519154-30519205)
chr1 (19-77)||(50804381-50804440)
[»] chr8 (4 HSPs)
chr8 (24-79)||(1249213-1249269)
chr8 (50-90)||(3093914-3093954)
chr8 (18-77)||(16338264-16338324)
chr8 (18-65)||(21602106-21602154)
[»] chr3 (1 HSPs)
chr3 (30-77)||(48047992-48048040)
[»] chr5 (3 HSPs)
chr5 (32-77)||(18970193-18970239)
chr5 (18-62)||(34033376-34033421)
chr5 (26-77)||(9607338-9607390)
[»] chr2 (1 HSPs)
chr2 (29-77)||(18903110-18903159)


Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 3314798 - 3314217
Alignment:
Q  18 gatataacaataagtaagtatattgaggactgatatgacagtattaacagaacattttaatgcaaaagattatcccgattaaaggagtgcacaactattt 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  3314798 gatataacaataagtaagtatattgaggactgatatgacaatattaacaaaacattttaatgcaaaagactattccaattaaaggagtgcacaactattt 3314699  T
Q  118 tcaaattttgatacatttgtgagttattatgattattcgttatacattcaggaccaaaatatctactattccattattcaaacatgtgtaccatgaagag 217  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3314698 tcaaatttttatacatttgtaagttattatgattatttgttatacattaaggaccaaaatatctattattccattattcaaacatgtgtaccatgaagag 3314599  T
Q  218 tgttgtttccctcattagcaattaacttgtaccggactccatttagagtaaactgagctcctccaattctgttagcaaccctaccaacggttgctccaaa 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3314598 tgttatttccctcattagcaattaacttgtaccggactccatttagagtaaactgagctcctccgattctgttagcaaccctaccaacggttgctccaaa 3314499  T
Q  318 gtatgatgtatcattctgcaaatttttagcattgcaactttgcaagtataaattactactttattgaaacnnnnnnnnnnnngtataaaccaaacacaca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||||||||||    
T  3314498 gtatgatgtatcattctgcaaatttttagcattgcaactttgcaagtat-aattactactttattgaaac--aaaaaaaaaagtataaaccaaacacaca 3314402  T
Q  418 tatatctatgatatgataagttatgtaagccactacatttatggaacccacaagttatgatctcaaattaagttactaaattattttgggaggccctctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3314401 tatatctatgatatgataagttatgtaagccactacatttatggaacccacaagttatgatctcaaattaagttactaaattattttgggaggccctctt 3314302  T
Q  518 agaagaaaaagaaaatagcaaacctacaacgtaaccaactaaattatttaacaaacaaataaacctttttctagggaacaccaaa 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3314301 agaagaaaaagaaaatagcaaacctacaacgtaaccaactaaattatttaacaaacaaataaacctttttctagggaacaccaaa 3314217  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 205 - 343
Target Start/End: Complemental strand, 3321538 - 3321400
Alignment:
Q  205 gtaccatgaagagtgttgtttccctcattagcaattaacttgtaccggactccatttagagtaaactgagctcctccaattctgttagcaaccctaccaa 304  Q
    ||||||||||||||||||||||| |||||||||||||| |||||  ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3321538 gtaccatgaagagtgttgtttccttcattagcaattaatttgtaatgggttccatttagagtaaactgagctcctccaattctattagcaaccctaccaa 3321439  T
Q  305 cggttgctccaaagtatgatgtatcattctgcaaatttt 343  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3321438 cggttgctccaaagtatgatgtatcattctgcaaatttt 3321400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 2298465 - 2298334
Alignment:
Q  206 taccatgaagagtgttgtttccctcattagcaattaacttgtaccggactccatttagagtaaactgagctcctccaattctgttagcaaccctaccaac 305  Q
    |||||||||| || |||||||| |||||||||| ||| |||||  |   |||||||||| |||| ||||||||||| ||||||||||||||||  |||||    
T  2298465 taccatgaagtgtattgtttccttcattagcaactaatttgtaatgctttccatttagattaaattgagctcctcctattctgttagcaacccgtccaac 2298366  T
Q  306 ggttgctccaaagtatgatgtatcattctgca 337  Q
     || ||||||||||||| || |||||||||||    
T  2298365 agtagctccaaagtatgttgaatcattctgca 2298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 23920279 - 23920239
Alignment:
Q  25 caataagtaagtatattgaggactgatatgacagtattaac 65  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  23920279 caataagtaagtatattaaggactgatatgacaatattaac 23920239  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 28286403 - 28286440
Alignment:
Q  28 taagtaagtatattgaggactgatatgacagtattaac 65  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  28286403 taagtaattatattgaggactgatatgacagtattaac 28286440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 13834497 - 13834441
Alignment:
Q  24 acaataagtaagtatattg-aggactgatatgacagtattaacagaacattttaatg 79  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| |  |||||||||    
T  13834497 acaataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatg 13834441  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 35075781 - 35075737
Alignment:
Q  33 aagtatattgaggactgatatgacagtattaacagaacattttaa 77  Q
    |||||| |||| ||||||||||  |||||||||||||||||||||    
T  35075781 aagtattttgaagactgatatggtagtattaacagaacattttaa 35075737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 36409650 - 36409698
Alignment:
Q  18 gatataacaataagtaagtatattg-aggactgatatgacagtattaac 65  Q
    |||| |||||||||||||||||||| |||||| |||||||| |||||||    
T  36409650 gataaaacaataagtaagtatattgaaggactaatatgacaatattaac 36409698  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 36423816 - 36423864
Alignment:
Q  18 gatataacaataagtaagtatattg-aggactgatatgacagtattaac 65  Q
    |||| |||||||||||||||||||| |||||| |||||||| |||||||    
T  36423816 gataaaacaataagtaagtatattgaaggactaatatgacaatattaac 36423864  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 51151010 - 51150954
Alignment:
Q  24 acaataagtaagtatattg-aggactgatatgacagtattaacagaacattttaatg 79  Q
    ||||||||||||||||||| || ||| |||||||| |||||||| || |||||||||    
T  51151010 acaataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatg 51150954  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 6541180 - 6541107
Alignment:
Q  18 gatataacaataagtaagtatattg-aggactgatatgacagtattaacagaacattttaatgcaaaagattat 90  Q
    ||||| ||||||||||||||||||| |||||| |||||||| |||||||  || |||||||||  |||||||||    
T  6541180 gatatgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatgtcaaagattat 6541107  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 30519205 - 30519154
Alignment:
Q  27 ataagtaagtatattgagg-actgatatgacagtattaacagaacattttaa 77  Q
    ||||||||||||||||||| | || |||||| ||||||||||||||||||||    
T  30519205 ataagtaagtatattgagggattggtatgactgtattaacagaacattttaa 30519154  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 50804440 - 50804381
Alignment:
Q  19 atataacaataagtaagtatattgag-gactgatatgacagtattaacagaacattttaa 77  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||||| |||| |||||||    
T  50804440 atataacaataggtaagtatattgagagactgaaatgacaatattaatagaagattttaa 50804381  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 1249213 - 1249269
Alignment:
Q  24 acaataagtaagtatattgagg-actgatatgacagtattaacagaacattttaatg 79  Q
    ||||||||||| |||||||| | ||||||||||||||||||||| || |||||||||    
T  1249213 acaataagtaaatatattgaagtactgatatgacagtattaacaaaatattttaatg 1249269  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 3093914 - 3093954
Alignment:
Q  50 atatgacagtattaacagaacattttaatgcaaaagattat 90  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  3093914 atatgacagtattaacagaacattttaatgttaaagattat 3093954  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 16338264 - 16338324
Alignment:
Q  18 gatataacaataagtaagtatattga-ggactgatatgacagtattaacagaacattttaa 77  Q
    ||||| |||||||||||||||||||| ||||  |||||||| |||||||| | ||||||||    
T  16338264 gatatgacaataagtaagtatattgatggacaaatatgacaatattaacaaagcattttaa 16338324  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 21602106 - 21602154
Alignment:
Q  18 gatataacaataagtaagtatattg-aggactgatatgacagtattaac 65  Q
    ||||||||||||||| ||||||||| |||||| |||||||| |||||||    
T  21602106 gatataacaataagttagtatattgaaggactaatatgacaatattaac 21602154  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 48047992 - 48048040
Alignment:
Q  30 agtaagtatattgagg-actgatatgacagtattaacagaacattttaa 77  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  48047992 agtaagtatattgagggactggtatgacagtattaacaaaacattttaa 48048040  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 18970193 - 18970239
Alignment:
Q  32 taagtatattgagg-actgatatgacagtattaacagaacattttaa 77  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||    
T  18970193 taagtatattgagggactgatatgacagtattaatggaacattttaa 18970239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34033376 - 34033421
Alignment:
Q  18 gatataacaataagtaagtatattga-ggactgatatgacagtatt 62  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||||    
T  34033376 gatataacagtaagtaagtatattgatggactcatatgacagtatt 34033421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 9607338 - 9607390
Alignment:
Q  26 aataagtaagtatattgag-gactgatatgacagtattaacagaacattttaa 77  Q
    ||||| ||||||||||||| ||||||||||||| || |||| |||||||||||    
T  9607338 aataaataagtatattgagagactgatatgacaatactaacggaacattttaa 9607390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 18903110 - 18903159
Alignment:
Q  29 aagtaagtatattgagg-actgatatgacagtattaacagaacattttaa 77  Q
    |||||||||||| |||| |||||||||||||| |||||||| ||||||||    
T  18903110 aagtaagtatatcgagggactgatatgacagtgttaacagagcattttaa 18903159  T

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