View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6954_low_9 (Length: 464)

Name: NF6954_low_9
Description: NF6954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6954_low_9
NF6954_low_9
[»] chr7 (5 HSPs)
chr7 (180-426)||(24625133-24625375)
chr7 (22-118)||(24624974-24625069)
chr7 (257-324)||(41020506-41020573)
chr7 (266-324)||(27093404-27093462)
chr7 (266-324)||(27184839-27184897)
[»] chr5 (3 HSPs)
chr5 (259-324)||(23012392-23012457)
chr5 (260-324)||(30502373-30502437)
chr5 (260-324)||(30542716-30542780)
[»] chr4 (5 HSPs)
chr4 (277-324)||(13134460-13134507)
chr4 (277-324)||(40742601-40742648)
chr4 (259-324)||(4781255-4781320)
chr4 (287-324)||(21539879-21539916)
chr4 (280-324)||(999353-999397)
[»] chr2 (3 HSPs)
chr2 (261-324)||(31808087-31808150)
chr2 (267-324)||(37411236-37411293)
chr2 (281-324)||(30527601-30527644)
[»] chr8 (3 HSPs)
chr8 (259-324)||(33405368-33405433)
chr8 (261-324)||(31580113-31580176)
chr8 (260-324)||(38079009-38079073)
[»] chr6 (3 HSPs)
chr6 (259-324)||(13364689-13364754)
chr6 (277-327)||(17411870-17411920)
chr6 (259-324)||(9658889-9658954)
[»] chr1 (4 HSPs)
chr1 (277-324)||(35999324-35999371)
chr1 (260-321)||(13997896-13997957)
chr1 (260-329)||(21530694-21530763)
chr1 (281-329)||(52903254-52903302)
[»] scaffold0697 (1 HSPs)
scaffold0697 (260-329)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (275-324)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 180 - 426
Target Start/End: Original strand, 24625133 - 24625375
Alignment:
Q  180 ttctctctatgactatcacacatagtacttcctatgttcctattggacactacctatcgagcatggacatttttta-attagacatgtgtcgtgttcaac 278  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||||    
T  24625133 ttctctctatgactatcacacatagtacttcctatgttcctattagacactacctattgagcacgaacattttttagattagacacgtgtcatgttcaac 24625232  T
Q  279 atcgacacatataataacactaaattttatgattttcttaaattatcaacgatattaatgtgtctgtatcgtgtctgatgtccgtatttgtgtttcatat 378  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||| | ||||||| |  || ||||||||    
T  24625233 atcaacatatataataacactaaattttatgattttcttaaattatcaacgatattaatgtctctg----atgtccg-tgtccgtgtccgtatttcatat 24625327  T
Q  379 gaagttaccctttattactttatttcttatattattaacggtgtcaac 426  Q
    |||  |||||||||||| || ||||||||||||||||||||| |||||    
T  24625328 gaaactaccctttattatttcatttcttatattattaacggtatcaac 24625375  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 24624974 - 24625069
Alignment:
Q  22 tcaccaaaatctcactcaccccatttaacctcctatactctgcgtcatctctcacatcaccactaaccacacacactcacacccatatctctctcaa 118  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24624974 tcaccaaaatctcactcaccccatttaatcccctatactctgcgtcatctctcacatcaccactaaccaca-acactcacacccatatctctctcaa 24625069  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 41020573 - 41020506
Alignment:
Q  257 ttagacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||||| | |||||||  ||||||||    
T  41020573 ttagatatgtgtcgtgttcaacaccgacgcatataattacactaaattatgtgatttttgtaaattat 41020506  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 27093404 - 27093462
Alignment:
Q  266 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27093404 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27093462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 27184897 - 27184839
Alignment:
Q  266 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27184897 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27184839  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 23012392 - 23012457
Alignment:
Q  259 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||| |||||||    
T  23012392 agacatgtgtcgtgtccaacaccgacacatataattacattaaattatatgattttctcaaattat 23012457  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 30502373 - 30502437
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30502373 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30502437  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 30542716 - 30542780
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30542716 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30542780  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 13134507 - 13134460
Alignment:
Q  277 acatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  13134507 acatcgacacatataattacactaaattatgtgattttcttaaattat 13134460  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 40742648 - 40742601
Alignment:
Q  277 acatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  40742648 acatcgacacatataattacactagattatatgattttctcaaattat 40742601  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 4781320 - 4781255
Alignment:
Q  259 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||| | |  |||||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  4781320 agacatgtgtcatatctaacatcgatacatataatcacactaaattatatgagttttttaaattat 4781255  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 21539879 - 21539916
Alignment:
Q  287 atataataacactaaattttatgattttcttaaattat 324  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  21539879 atataattacactaaattatatgattttcttaaattat 21539916  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 999353 - 999397
Alignment:
Q  280 tcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||||||||| |||||||||| |||||||| || |||||||    
T  999353 tcgacacatataattacactaaattatatgatttactcaaattat 999397  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 31808150 - 31808087
Alignment:
Q  261 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| | ||||||| |||||||||    
T  31808150 acatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaaattat 31808087  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 37411236 - 37411293
Alignment:
Q  267 gtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||    
T  37411236 gtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 30527601 - 30527644
Alignment:
Q  281 cgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattat 30527644  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 33405368 - 33405433
Alignment:
Q  259 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||||| | ||| ||||||||||||| |||||||||| | || |||||| |||||||    
T  33405368 agacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattat 33405433  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 31580113 - 31580176
Alignment:
Q  261 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||||| || | |||||||||| |||||| ||||| |||| | |||||||||||||||||    
T  31580113 acatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattat 31580176  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 38079073 - 38079009
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||| ||||||| | |||||||| |||||||| ||||| |||  | |||||||||||||||||    
T  38079073 gacatgcgtcgtgtccgacatcgacgcatataattacactgaatcatgtgattttcttaaattat 38079009  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 13364689 - 13364754
Alignment:
Q  259 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    |||||||| |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||    
T  13364689 agacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 17411870 - 17411920
Alignment:
Q  277 acatcgacacatataataacactaaattttatgattttcttaaattatcaa 327  Q
    ||||| ||||||||||| | ||| |||| ||||||||||||||||||||||    
T  17411870 acatccacacatataattatactgaattatatgattttcttaaattatcaa 17411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 9658954 - 9658889
Alignment:
Q  259 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||| |||||||||  |||| ||||| ||||||| ||||| |||| | |||||||||||||||||    
T  9658954 agacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattat 9658889  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 35999324 - 35999371
Alignment:
Q  277 acatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  35999324 acatcaacacatataattatactaaattatatgattttcttaaattat 35999371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 13997957 - 13997896
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaat 321  Q
    |||||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||| ||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttttttaaat 13997896  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 21530763 - 21530694
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 329  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  21530763 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 21530694  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 52903302 - 52903254
Alignment:
Q  281 cgacacatataataacactaaattttatgattttcttaaattatcaacg 329  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||| ||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattattaacg 52903254  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 1718 - 1649
Alignment:
Q  260 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 329  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  1718 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 1649  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 29508503 - 29508454
Alignment:
Q  275 caacatcgacacatataataacactaaattttatgattttcttaaattat 324  Q
    ||||||||||||||||||| ||||| |||| ||||||||| | |||||||    
T  29508503 caacatcgacacatataattacactgaattatatgattttttcaaattat 29508454  T

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