View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6955_low_2 (Length: 485)
Name: NF6955_low_2
Description: NF6955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6955_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 2288092 - 2288548
Alignment:
| Q |
19 |
gatttacacttgccaaaaatcaatcgtcattaggagttacactcatcatcttcaaagtaaacaaaaaagatatcagatttaaagcagtcattttttccta |
118 |
Q |
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| T |
2288092 |
gatttacacttgccaaaaatcaatcgtcattaggagttacactcat---cttcaaagtaaataaaaaagatatcagatttaaagtagtcattttttccta |
2288188 |
T |
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| Q |
119 |
cattcatgtgatcaagacattacggtccagaagaaaaatacttaatttttacttcataatccctaaaataccgagtttaaattaggatcgtctgatcttg |
218 |
Q |
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| T |
2288189 |
cattcacgtgatcaagacattacggtccagaagaaaaatacttaatttttacttcataatccctaaaataccgagtttaaattaggatcgtccgatcttg |
2288288 |
T |
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| Q |
219 |
atcaaacagtcaccgaaacatgattgcatcactttaccaaccgcaccaaatctttatccaacacaaaatgaaatattttgctcaacccaaccaagtcata |
318 |
Q |
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| T |
2288289 |
atcaaacagtcaccgaaacatgattgcatcactttaccaaccgaaccaaatcttgatccaacacaaaatgaaatattttgctcaacccaaccaagtcata |
2288388 |
T |
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| Q |
319 |
catgtacataattcttgtattttcaaaacgaaattcgtgaataaaaattggaaagaatattgcacaaatacaaagctaaaaccaattaaatgtaatatgg |
418 |
Q |
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| T |
2288389 |
catgtacataattcttgtattttcaaaacgaaattcctgaataaaaattggaaagaatattgcacaaatacaaagctaaaaccaattaaatgtaatatgg |
2288488 |
T |
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| Q |
419 |
gtcgatagttagtccttgttactggagtgggagaggataatactcactcatattcatctc |
478 |
Q |
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| T |
2288489 |
gtcgatagttagtccttgttactggagtgggagaggataatacacactcatattcatctc |
2288548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 24999682 - 24999624
Alignment:
| Q |
197 |
aaattaggatcgtctgatcttgatcaaacagtcaccgaaacatgattgcatcactttac |
255 |
Q |
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| T |
24999682 |
aaatcaggatcgtctgatcttgatcgaacagacaccgaaacaggactgtgtcactttac |
24999624 |
T |
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