View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6955_low_4 (Length: 316)
Name: NF6955_low_4
Description: NF6955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6955_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 53052537 - 53052834
Alignment:
| Q |
1 |
gctaaaatatatgaaacacaaatatagaaatgaatcaatgatcgatatatatcagcagctcaaacaaaattcgacactagagcattttagcatactaaat |
100 |
Q |
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| T |
53052537 |
gctaaaatatatgaaccacaaatatagaaatgaatcaatgatcgatatatatcagcagctcaaacaaaattcgacactagagcattttagcatactaaat |
53052636 |
T |
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| Q |
101 |
ttataacgagtctagttttactataatttctcaagacttgaactaattgtagcagttcatctgcacaatccaacacattagagactagatggcaaagcgt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53052637 |
ttataacgagtctagtgttactataatttctcaagacttgaactaattgtagcagttcatctgcacaatccaacacattagagactagatggcaaagtgt |
53052736 |
T |
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| Q |
201 |
agtatttatataatctttgagaatgagaatgggatcacattttatgggctctaatgcttcgaatattatcattttatttcttgtgtctttgaagatac |
298 |
Q |
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| T |
53052737 |
agtatttatataatctttgagaatgagaatgggatcacattttatgggctctaatgcttcgaatattatcattttatttcttgtgtctttgaagatac |
53052834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 16483447 - 16483500
Alignment:
| Q |
95 |
ctaaatttataacgagtctagttttactataatttctcaagacttgaactaatt |
148 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
16483447 |
ctaaatttataacgagtctagttatactataatttctcaagactcaaactaatt |
16483500 |
T |
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