View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6955_low_5 (Length: 297)
Name: NF6955_low_5
Description: NF6955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6955_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34963488 - 34963769
Alignment:
| Q |
1 |
tcagatgttactaatggaccttgccatatagctttatacatcgcgacatgtgattttgaagctattcctgaagctgttccagccgcataaccaaagaatg |
100 |
Q |
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| T |
34963488 |
tcagatgttactaatggaccttgccatatagctttatacatcgcgacatgtgattttgaagctattcctgaagctgttccagccgcataaccaaagaatg |
34963587 |
T |
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| Q |
101 |
atgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgtggagtttaatcctaaggtgatgttaggata |
200 |
Q |
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| T |
34963588 |
atgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgtggagtttaatcctaaggtgatgttaggata |
34963687 |
T |
|
| Q |
201 |
ttttgctaataatcctctgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattgaaatgaatgctattt |
282 |
Q |
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| T |
34963688 |
ttttgctaataatcctctgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattgaaatgaatgctattt |
34963769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 8957330 - 8957072
Alignment:
| Q |
24 |
ccatatagctttatacatcgcgacatgtgattttgaagctattcctgaagctgttccagccgcataaccaaagaatgatgcatggtcaactctgcttcca |
123 |
Q |
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| T |
8957330 |
ccatattgctttatacatagctacacgtgaatttgaagctattcctgaagctgttccaggtgcataaccaaaaaatgaagcatcatcaactctgtttcca |
8957231 |
T |
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| Q |
124 |
gctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgtggagtttaatcctaaggtgatgttaggatattttgctaataatcctctgttga |
223 |
Q |
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| T |
8957230 |
gctgctgttgatgaagtgtgagtcccatgaccatgtgaatcacgagtggagtttaaacctaaggttatgtttggatatttggattgcaatcctttgttga |
8957131 |
T |
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| Q |
224 |
agaatttagctccaatgagtttcttgttgcaaagagatgaattgaaatgaatgctattt |
282 |
Q |
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| T |
8957130 |
agaatttggcaccaatgagtttcttgttgcaaagagatgaattgaaaagaatgctattt |
8957072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 267
Target Start/End: Complemental strand, 8973673 - 8973488
Alignment:
| Q |
85 |
gcataaccaaagaatgatgcatggtcaactctgcttcc-agctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgtggagtttaatcct |
183 |
Q |
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| T |
8973673 |
gcataaccaaagaatgatgcaccatcaact-tgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaatt |
8973575 |
T |
|
| Q |
184 |
aag---gtgatgttaggatattttgctaataatcctctgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
267 |
Q |
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| || | || ||||||||||| || || ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
8973574 |
gtgttagttagatttggatattttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattg |
8973488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 8962135 - 8962086
Alignment:
| Q |
218 |
tgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
267 |
Q |
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||||||||||| | |||||||||||||| |||||||||| |||||||||| |
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| T |
8962135 |
tgttgaagaatcttgctccaatgagttttttgttgcaaaaagatgaattg |
8962086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 8946960 - 8947007
Alignment:
| Q |
220 |
ttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattg |
267 |
Q |
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||||||||| | ||||||||||||||||||||||||| ||||||||| |
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| T |
8946960 |
ttgaagaatcttgctccaatgagtttcttgttgcaaaatgatgaattg |
8947007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 8946822 - 8946907
Alignment:
| Q |
85 |
gcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgt |
170 |
Q |
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|||||||||||||| |||||| |||||| |||| ||||||||||||||||| || ||||||||||| | ||||||||||| |
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| T |
8946822 |
gcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
8946907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 49007162 - 49006981
Alignment:
| Q |
73 |
gctgttccagccgcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgtgg |
172 |
Q |
| |
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|||| |||||| ||||| || ||||| ||||||| |||||| | |||||||| || || |||||||| ||||| |||||||| || |||||||||||| |
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| T |
49007162 |
gctgatccagcggcatagccgaagaaggatgcatcctcaactttacttccagcagcagtggttgaagtgtgagtaccatgaccgtctatgtcacgtgtgg |
49007063 |
T |
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| Q |
173 |
agtttaatcctaaggtgatgttaggatattttgctaataatcctctgttgaagaatttagctccaatgagtttcttgttgca |
254 |
Q |
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| T |
49007062 |
agttcatggttatagtgatgttaggattatttgctagtaatcctttgttaaagaatcgagctcctatgagttttttgttgca |
49006981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 21687961 - 21688052
Alignment:
| Q |
85 |
gcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttccgtgtcacgtgtggagtt |
176 |
Q |
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| T |
21687961 |
gcatagccaaagaaagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgtttgtgtcacgtgtggagtt |
21688052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 21688080 - 21688147
Alignment:
| Q |
201 |
ttttgctaataatcctctgttgaagaatttagctccaatgagtttcttgttgcaaagagatgaattga |
268 |
Q |
| |
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|||||| || || ||| |||||||||| ||||||||||||||||||||||||| | |||| |||||| |
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| T |
21688080 |
ttttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcacaaagataaattga |
21688147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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