View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6955_low_7 (Length: 250)
Name: NF6955_low_7
Description: NF6955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6955_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 40378899 - 40379142
Alignment:
| Q |
8 |
atatgagtccttaaacaaattcctttgaagagaaactgttttaaaaaataaataatctggtatgtacc-----ggaaaattcagagcctaggattatttt |
102 |
Q |
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| T |
40378899 |
atatgagtccttaaacaaattcctttgaagagaaattgttttaaaaaataaataatctggtatgtaccacttaggaaaattcagagcctaggattatttt |
40378998 |
T |
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| Q |
103 |
attttcctttttggtttctttagagc------tatattatgtactactaggtggcgtaaagaaacaaaattcctatatgaaacaaacaacaggttatgca |
196 |
Q |
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| T |
40378999 |
cttttcctttttggtttctttagagctatatttatattatgtactactaggtggcgtaaagaaacaaaattcctgtatg----aaacaacaggttatgca |
40379094 |
T |
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| Q |
197 |
accacagccactaaagtgataaagcattaatcaccattcaccaccaaa |
244 |
Q |
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| T |
40379095 |
accacagccactaaagtgataaagcattaatcaccattcaccaccaaa |
40379142 |
T |
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