View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6956_high_1 (Length: 696)
Name: NF6956_high_1
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6956_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 580494 - 581180
Alignment:
| Q |
1 |
gtgtggaatcgactttaacaccaactcacccaaatcttggcgcaatgttcatcttgaattccccctcctaacaaaatttgaggctaaaaactgcgcttgg |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
580494 |
gtgtggaatcaactttaacaccgactcacccaaatcttggcgcaatgttcatcttgaattccctctcctaacaaaatttgaggctaaaaactgcgcttgg |
580593 |
T |
|
| Q |
101 |
tttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580594 |
tttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcattta |
580693 |
T |
|
| Q |
201 |
tctgcttccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcggctaa |
300 |
Q |
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| T |
580694 |
tctgcttccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcagctaa |
580793 |
T |
|
| Q |
301 |
aatcaatttatatgagagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattc |
400 |
Q |
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| T |
580794 |
aatcaatttatatgagagccaacactttgtaagttatatgtcagatttccatgctgctgcacttcttggtgaattcagtcactcaaaatctatcaaattc |
580893 |
T |
|
| Q |
401 |
gaatcatcaaaggtaagtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggat |
500 |
Q |
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| T |
580894 |
gagtcatcaaaggtaagtatattattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggat |
580993 |
T |
|
| Q |
501 |
aaatatttatgagtttaatccttttgttataatataaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagct |
600 |
Q |
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| T |
580994 |
aaatatttatgagtttaatccttttgttgtaatataaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagct |
581093 |
T |
|
| Q |
601 |
atgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcacaggttct |
687 |
Q |
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| T |
581094 |
atgtgtatttccaatgttgacccatttggaggttggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttct |
581180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 600 - 687
Target Start/End: Original strand, 1214741 - 1214828
Alignment:
| Q |
600 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcacaggttct |
687 |
Q |
| |
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| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttct |
1214828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 583 - 676
Target Start/End: Original strand, 1207516 - 1207609
Alignment:
| Q |
583 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaag |
676 |
Q |
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||||| ||||||| |||| || |||||||||||||||||| ||||||||||||| || |||||||| || ||||||||| | || ||||||||| |
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| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaag |
1207609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 1201351 - 1201412
Alignment:
| Q |
599 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctctt |
660 |
Q |
| |
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|||||||||||| ||| |||||| |||||||||||||| || |||||||||||| |||||| |
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| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctctt |
1201412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 1214316 - 1214381
Alignment:
| Q |
253 |
tatatcacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatgagag |
318 |
Q |
| |
|
|||| ||||| ||||| |||| | |||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
1214316 |
tataccacaacacattttaatgacgtccccatgccatgcttctactaaaatcattttacatgagag |
1214381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 1200763 - 1200807
Alignment:
| Q |
59 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggttt |
103 |
Q |
| |
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| T |
1200763 |
ttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
1200807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 596 - 676
Target Start/End: Complemental strand, 8188851 - 8188771
Alignment:
| Q |
596 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaag |
676 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| |
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| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaag |
8188771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 8192831 - 8192727
Alignment:
| Q |
59 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcg |
158 |
Q |
| |
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||||| || ||||||||||||||| | |||||||||||||||||||||||| || ||| ||| ||| | || |||||||||||||| ||||| || | |
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| T |
8192831 |
ttcccacttctaacaaaatttgagaccaaaaactgcgcttggtttgttgatgcaacttgggtctctatagatgctcctctacttgaaagtatttccattg |
8192732 |
T |
|
| Q |
159 |
aacat |
163 |
Q |
| |
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||||| |
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| T |
8192731 |
aacat |
8192727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 531 - 571
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
531 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
571 |
Q |
| |
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|||||||||||||||||||| | ||| |||||||||||||| |
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| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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