View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6956_high_4 (Length: 244)
Name: NF6956_high_4
Description: NF6956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6956_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 549749 - 549541
Alignment:
| Q |
20 |
ctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549749 |
ctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatcc |
549650 |
T |
|
| Q |
120 |
aagaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
549649 |
aagaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaacttg |
549550 |
T |
|
| Q |
220 |
ttcaaaaac |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
549549 |
ttcaaaaac |
549541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 23422879 - 23423087
Alignment:
| Q |
20 |
ctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctcagatcaatatcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23422879 |
ctcattccaactcttggttctcctacaccatctaccaaatccatcttaaactctcttccaccaaacattgattttacattccttcctcatatcaatatcc |
23422978 |
T |
|
| Q |
120 |
aagaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttg |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422979 |
aggaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaacttg |
23423078 |
T |
|
| Q |
220 |
ttcaaaaac |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
23423079 |
ttcaaaaac |
23423087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University